Variant report

Variant	rs11834507
Chromosome Location	chr12:4108124-4108125
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:4107032..4110913-chr12:4140387..4144108,4	MCF-7	breast:
2	chr12:4107365..4111293-chr12:4136025..4140047,4	MCF-7	breast:
3	chr12:4106157..4109140-chr12:4146186..4148270,2	MCF-7	breast:
4	chr12:4105433..4107342-chr12:4107411..4109246,2	MCF-7	breast:
5	chr12:4104391..4106622-chr12:4107438..4109627,2	MCF-7	breast:
6	chr12:4107368..4109265-chr12:4110161..4111964,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4551841	0.85[ASN][1000 genomes]
rs4765761	0.91[EUR][1000 genomes]
rs4766193	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv832316	chr12:3981184-4180381	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761723	chr12:4096815-4161871	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv13469	chr12:4107971-4109977	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4099000-4109200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:4104000-4109800	Enhancers	Placenta	Placenta
3	chr12:4104000-4110200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr12:4104200-4109800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:4104600-4110000	Enhancers	HepG2	liver
6	chr12:4104800-4109800	Enhancers	Pancreas	Pancrea
7	chr12:4105000-4108600	Weak transcription	Fetal Stomach	stomach
8	chr12:4105200-4109800	Enhancers	Fetal Intestine Large	intestine
9	chr12:4105400-4109400	Enhancers	Primary T cells from cord blood	blood
10	chr12:4105400-4109800	Enhancers	Fetal Intestine Small	intestine
11	chr12:4105800-4108800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:4106000-4108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:4106400-4108400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:4106800-4108800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr12:4106800-4109200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr12:4106800-4109800	Enhancers	Fetal Muscle Leg	muscle
17	chr12:4107000-4108600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr12:4107000-4112600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr12:4107400-4108800	Enhancers	Fetal Muscle Trunk	muscle
20	chr12:4107400-4109400	Enhancers	Fetal Thymus	thymus
21	chr12:4107400-4109600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:4107400-4109800	Enhancers	NHEK	skin
23	chr12:4107600-4110000	Enhancers	HMEC	breast
24	chr12:4107600-4121600	Weak transcription	Esophagus	oesophagus
25	chr12:4107800-4108200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr12:4107800-4108800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr12:4107800-4109400	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr12:4108000-4108400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr12:4108000-4108400	Enhancers	Duodenum Mucosa	Duodenum
30	chr12:4108000-4109800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr12:4108000-4109800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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