Variant report

Variant	rs11834735
Chromosome Location	chr12:63479491-63479492
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10784330	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877950	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877952	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1390035	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1495016	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1845600	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2132121	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3898674	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4763051	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57662658	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7297581	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7304533	0.89[ASN][1000 genomes]
rs7311559	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7964330	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7979708	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9788068	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2751108	chr12:63445933-63503952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63472800-63480400	Enhancers	Fetal Intestine Small	intestine
2	chr12:63473400-63480600	Enhancers	Fetal Intestine Large	intestine
3	chr12:63474200-63485800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:63475200-63487200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:63477000-63480400	Enhancers	Fetal Kidney	kidney
6	chr12:63477600-63480600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:63477600-63480600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:63477600-63480600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:63477600-63481400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:63477800-63479800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:63477800-63480000	Weak transcription	Liver	Liver
12	chr12:63477800-63480200	Weak transcription	Gastric	stomach
13	chr12:63478200-63480400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:63478400-63480000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:63478600-63479800	Weak transcription	Stomach Mucosa	stomach
16	chr12:63478600-63480400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr12:63478800-63479800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr12:63479000-63480200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:63479200-63479800	Active TSS	Brain Anterior Caudate	brain
20	chr12:63479200-63480000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:63479200-63480000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:63479200-63480400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr12:63479400-63480000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr12:63479400-63480200	Weak transcription	H1 Cell Line	embryonic stem cell

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