Variant report

Variant	rs11835197
Chromosome Location	chr12:44357629-44357630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11608602	0.88[MEX][hapmap]
rs11837742	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1531402	0.81[TSI][hapmap]
rs55656444	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55900603	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56105344	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58915539	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61932976	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61932977	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61932981	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61933007	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61933008	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73085708	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44342000-44367200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:44343600-44359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:44343600-44363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
5	chr12:44346000-44357800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:44346200-44363800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:44352000-44363400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:44353800-44358000	Weak transcription	Stomach Mucosa	stomach
9	chr12:44354400-44359000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr12:44354400-44367000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:44354600-44359000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr12:44356200-44368000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr12:44356600-44358800	Weak transcription	HepG2	liver
14	chr12:44356800-44359200	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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