Variant report

Variant	rs11836149
Chromosome Location	chr12:41681353-41681354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11830052	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17129172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1897230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv558700	chr12:41665279-41710912	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41671200-41684600	Weak transcription	Ovary	ovary
2	chr12:41679800-41682600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr12:41680000-41682200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:41680000-41682400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:41680200-41682200	Enhancers	Fetal Lung	lung
6	chr12:41680400-41681400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:41680400-41681400	Weak transcription	Brain Germinal Matrix	brain
8	chr12:41680400-41681600	Weak transcription	Fetal Stomach	stomach
9	chr12:41680400-41681800	Enhancers	Brain Angular Gyrus	brain
10	chr12:41680400-41682000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:41680400-41682000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:41680400-41682000	Enhancers	Brain Anterior Caudate	brain
13	chr12:41680400-41683600	Enhancers	Fetal Kidney	kidney
14	chr12:41680600-41681600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:41680600-41681600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:41680600-41682000	Weak transcription	Colon Smooth Muscle	Colon
17	chr12:41680600-41688000	Weak transcription	Aorta	Aorta
18	chr12:41680800-41681800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr12:41680800-41682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr12:41681000-41682000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:41681000-41682200	Enhancers	Brain Hippocampus Middle	brain
22	chr12:41681000-41682600	Enhancers	Fetal Intestine Large	intestine
23	chr12:41681200-41681800	Enhancers	Brain Substantia Nigra	brain
24	chr12:41681200-41682000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr12:41681200-41682000	Enhancers	Brain Cingulate Gyrus	brain

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