Variant report

Variant	rs11836877
Chromosome Location	chr12:67056206-67056207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67054441..67056343-chr12:67057026..67059042,3	MCF-7	breast:
2	chr12:67053423..67055434-chr12:67055731..67058319,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58237343	1.00[AMR][1000 genomes]
rs74100509	1.00[AMR][1000 genomes]
rs74100511	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv832449	chr12:66885819-67069953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv915982	chr12:67050863-67189954	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047085	chr12:67052384-67199621	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67053000-67062200	Weak transcription	Right Atrium	heart
2	chr12:67054600-67059600	Enhancers	Primary B cells from cord blood	blood
3	chr12:67054800-67056800	Enhancers	GM12878-XiMat	blood
4	chr12:67054800-67057800	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:67055000-67057200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:67055200-67058200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:67055600-67056800	Flanking Active TSS	NHEK	skin
8	chr12:67055600-67057000	Enhancers	Fetal Lung	lung
9	chr12:67055600-67057800	Enhancers	HMEC	breast
10	chr12:67055800-67058200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:67056000-67056800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:67056000-67056800	Enhancers	NH-A	brain
13	chr12:67056000-67057000	Enhancers	Fetal Brain Male	brain
14	chr12:67056000-67057000	Enhancers	HSMM	muscle
15	chr12:67056000-67057400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr12:67056000-67057400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:67056000-67057400	Enhancers	HUVEC	blood vessel
18	chr12:67056000-67061600	Weak transcription	HSMMtube	muscle
19	chr12:67056200-67056400	Enhancers	Colon Smooth Muscle	Colon
20	chr12:67056200-67056800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:67056200-67056800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:67056200-67056800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr12:67056200-67057000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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