Variant report
| Variant | rs11837303 |
|---|---|
| Chromosome Location | chr12:49115612-49115613 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000129315 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10506282 | 1.00[AFR][1000 genomes] |
| rs11834833 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17123238 | 1.00[AFR][1000 genomes] |
| rs17123259 | 1.00[AFR][1000 genomes] |
| rs17123261 | 1.00[AFR][1000 genomes] |
| rs17123267 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3332169 | chr12:49005807-49150691 | Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | esv3439234 | chr12:49115458-49115761 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
