Variant report

Variant	rs11837611
Chromosome Location	chr12:44500149-44500150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10506234	0.86[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10506238	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11613902	0.86[CHB][hapmap];0.96[ASN][1000 genomes]
rs11834667	0.86[ASN][1000 genomes]
rs12315961	0.86[CHB][hapmap];0.96[ASN][1000 genomes]
rs1352935	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs17094063	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs17094097	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17094102	0.86[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094110	0.86[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094117	0.86[CHB][hapmap];0.96[ASN][1000 genomes]
rs17094119	0.86[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28495612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28838075	0.96[ASN][1000 genomes]
rs55950371	0.87[ASN][1000 genomes]
rs59628873	0.96[ASN][1000 genomes]
rs60026566	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61399923	1.00[ASN][1000 genomes]
rs6582498	0.86[CHB][hapmap];0.96[ASN][1000 genomes]
rs68049983	0.96[ASN][1000 genomes]
rs7298069	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7298835	0.86[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73272204	0.88[AFR][1000 genomes]
rs73272217	0.87[AFR][1000 genomes]
rs73288050	0.96[ASN][1000 genomes]
rs73288052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7953173	0.86[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7961986	0.87[AFR][1000 genomes]
rs7967819	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7967957	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs7971340	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs7980383	0.86[CHB][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44482800-44501000	Weak transcription	Left Ventricle	heart
2	chr12:44489000-44500600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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