Variant report

Variant	rs11837759
Chromosome Location	chr12:65024544-65024545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:65002843..65006051-chr12:65023812..65028025,5	MCF-7	breast:
2	chr12:65023053..65026165-chr12:65027701..65030902,3	K562	blood:
3	chr12:65001959..65007139-chr12:65021874..65025265,5	K562	blood:
4	chr12:65024223..65026567-chr12:65034378..65036625,2	K562	blood:
5	chr12:65019590..65021389-chr12:65024467..65026055,3	K562	blood:
6	chr12:65011047..65013425-chr12:65022632..65024706,2	MCF-7	breast:
7	chr12:65017967..65023597-chr12:65023649..65027949,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153179	Chromatin interaction
ENSG00000256670	Chromatin interaction
ENSG00000225195	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1008159	0.85[CEU][hapmap]
rs11175470	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175471	0.85[CEU][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175476	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175478	0.85[CEU][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11175481	0.86[EUR][1000 genomes]
rs12230536	0.85[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs12814316	0.85[CEU][hapmap]
rs12816847	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs12829878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12830436	0.85[CEU][hapmap]
rs12831875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12833931	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17223244	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17223377	0.85[CEU][hapmap]
rs17823442	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2078398	0.85[CEU][hapmap]
rs35512928	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35860561	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7303641	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7959471	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832444	chr12:64981484-65168472	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv559203	chr12:65002969-65199922	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1045216	chr12:65009102-65176894	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv541513	chr12:65009102-65176894	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv469457	chr12:65009243-65195977	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv559204	chr12:65009243-65195977	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv438218	chr12:65017844-65037483	Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:65006800-65031800	Weak transcription	Dnd41	blood
2	chr12:65018000-65024600	Weak transcription	Aorta	Aorta
3	chr12:65018400-65029200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:65018600-65024800	Weak transcription	Gastric	stomach
5	chr12:65018600-65035000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:65019400-65024800	Weak transcription	Right Ventricle	heart
7	chr12:65019600-65027800	Weak transcription	Pancreas	Pancrea
8	chr12:65019800-65025800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:65019800-65025800	Weak transcription	Fetal Lung	lung
10	chr12:65019800-65025800	Weak transcription	Psoas Muscle	Psoas
11	chr12:65019800-65026200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:65019800-65026400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:65019800-65026600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:65019800-65028400	Weak transcription	Colonic Mucosa	Colon
15	chr12:65019800-65028600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:65019800-65029200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr12:65019800-65030600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:65019800-65047400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:65020200-65024800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:65020200-65026000	Weak transcription	Fetal Thymus	thymus
21	chr12:65020200-65026200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:65020200-65026400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:65020400-65026400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:65020400-65027400	Weak transcription	Fetal Intestine Large	intestine
25	chr12:65020600-65024800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:65020600-65024800	Weak transcription	Lung	lung
27	chr12:65020600-65028200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr12:65020800-65027800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr12:65021200-65025800	Weak transcription	HepG2	liver
30	chr12:65021200-65026400	Weak transcription	K562	blood
31	chr12:65021200-65031200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr12:65021400-65029600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr12:65021400-65043400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr12:65021600-65025000	Weak transcription	Right Atrium	heart
35	chr12:65021600-65026200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr12:65021600-65029400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
37	chr12:65021600-65030600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr12:65021800-65024600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr12:65021800-65026800	Weak transcription	Hela-S3	cervix
40	chr12:65021800-65027200	Weak transcription	Small Intestine	intestine
41	chr12:65021800-65027600	Weak transcription	NHEK	skin
42	chr12:65021800-65037000	Weak transcription	Adipose Nuclei	Adipose
43	chr12:65021800-65038000	Weak transcription	Ovary	ovary
44	chr12:65022000-65027600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr12:65022000-65027800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:65022200-65026400	Strong transcription	Fetal Stomach	stomach
47	chr12:65022200-65027800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr12:65022200-65029200	Genic enhancers	Primary T cells fromperipheralblood	blood
49	chr12:65022400-65024600	Strong transcription	Fetal Intestine Small	intestine
50	chr12:65022400-65024800	Weak transcription	Rectal Mucosa Donor 31	rectum

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