Variant report

Variant	rs11838184
Chromosome Location	chr12:106548935-106548936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11832418	1.00[YRI][hapmap]
rs11837582	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106542200-106551800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:106546000-106552200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:106548000-106549400	Enhancers	HUVEC	blood vessel
4	chr12:106548200-106549400	Enhancers	Psoas Muscle	Psoas
5	chr12:106548200-106549400	Enhancers	Hela-S3	cervix
6	chr12:106548400-106549200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr12:106548400-106549400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr12:106548600-106549000	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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