Variant report

Variant	rs11838305
Chromosome Location	chr12:83950398-83950399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11829151	1.00[AMR][1000 genomes]
rs11832298	1.00[AMR][1000 genomes]
rs11835525	1.00[AMR][1000 genomes]
rs55793072	1.00[AMR][1000 genomes]
rs56050669	1.00[AMR][1000 genomes]
rs57189980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58825414	1.00[AMR][1000 genomes]
rs61482473	1.00[AMR][1000 genomes]
rs74106449	1.00[AMR][1000 genomes]
rs74106450	1.00[AMR][1000 genomes]
rs74106452	1.00[AMR][1000 genomes]
rs74106456	1.00[AMR][1000 genomes]
rs74106462	1.00[AMR][1000 genomes]
rs74106463	1.00[AMR][1000 genomes]
rs74106476	1.00[AMR][1000 genomes]
rs74107103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107166	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107299	1.00[AMR][1000 genomes]
rs74107921	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83950200-83950400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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