Variant report

Variant	rs11839270
Chromosome Location	chr13:76588321-76588322
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11842449	0.98[EUR][1000 genomes]
rs12585923	0.98[EUR][1000 genomes]
rs17065531	0.98[EUR][1000 genomes]
rs17065549	0.98[EUR][1000 genomes]
rs17065554	0.98[EUR][1000 genomes]
rs17663347	0.98[EUR][1000 genomes]
rs17729733	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17729968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17731377	0.98[EUR][1000 genomes]
rs17731582	0.98[EUR][1000 genomes]
rs7322423	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74094944	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76580400-76588400	Weak transcription	Ovary	ovary
2	chr13:76583800-76588400	Weak transcription	NHLF	lung
3	chr13:76584600-76588400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:76584600-76593800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:76586000-76590200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr13:76586200-76588400	Weak transcription	Fetal Lung	lung
7	chr13:76586600-76588400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:76586600-76588400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:76586600-76588400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:76586600-76588400	Weak transcription	Osteobl	bone
11	chr13:76586600-76588600	Weak transcription	Aorta	Aorta
12	chr13:76586800-76588400	Weak transcription	HSMM	muscle
13	chr13:76586800-76589000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:76587000-76588400	Weak transcription	HMEC	breast
15	chr13:76587000-76588400	Weak transcription	HSMMtube	muscle
16	chr13:76587000-76588600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr13:76587000-76589200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:76587200-76588400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:76587200-76588400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:76587400-76588400	Enhancers	Fetal Heart	heart
21	chr13:76587400-76589800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr13:76587600-76588400	Weak transcription	NH-A	brain
23	chr13:76587600-76590200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr13:76588000-76588800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:76588000-76589400	Enhancers	Right Atrium	heart
26	chr13:76588200-76588400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links