Variant report

Variant	rs11841382
Chromosome Location	chr13:38004672-38004673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12584046	0.83[EUR][1000 genomes]
rs12584670	1.00[CEU][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs13378940	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17055629	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17055871	0.89[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs1853326	0.94[ASN][1000 genomes]
rs57123822	0.97[ASN][1000 genomes]
rs60979745	0.97[ASN][1000 genomes]
rs61946593	0.83[EUR][1000 genomes]
rs61947225	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61947241	0.99[ASN][1000 genomes]
rs6563537	0.99[ASN][1000 genomes]
rs6563539	0.99[ASN][1000 genomes]
rs6563540	0.98[ASN][1000 genomes]
rs7139878	0.95[ASN][1000 genomes]
rs71432626	0.81[ASN][1000 genomes]
rs7324216	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs7334573	0.93[ASN][1000 genomes]
rs7337526	0.89[CEU][hapmap]
rs7338422	1.00[CEU][hapmap]
rs7982721	0.99[ASN][1000 genomes]
rs7983783	0.88[ASN][1000 genomes]
rs7989580	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8001314	0.99[ASN][1000 genomes]
rs875082	0.83[EUR][1000 genomes]
rs9547852	0.94[ASN][1000 genomes]
rs9547864	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9547867	0.99[ASN][1000 genomes]
rs9547869	0.99[ASN][1000 genomes]
rs9547871	0.99[ASN][1000 genomes]
rs9594202	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9594214	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9603181	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603182	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603183	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603184	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603185	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9603194	0.83[EUR][1000 genomes]
rs9603210	0.83[EUR][1000 genomes]
rs9603213	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38003200-38005200	Enhancers	NHDF-Ad	bronchial
2	chr13:38003400-38005000	Enhancers	NHLF	lung
3	chr13:38003400-38006200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:38003800-38004800	Enhancers	Osteobl	bone
5	chr13:38003800-38005200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:38004000-38005000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:38004200-38017200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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