Variant report

Variant	rs11843513
Chromosome Location	chr13:80027035-80027036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:80022791..80024842-chr13:80026377..80029188,2	K562	blood:
2	chr13:80025882..80028470-chr13:80030398..80033837,6	K562	blood:
3	chr13:80025824..80027487-chr13:80029929..80031898,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11839222	0.85[YRI][hapmap]
rs11839375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11842488	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17071513	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17071551	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58776838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61528458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80020600-80034000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:80022400-80027200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr13:80025200-80027200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr13:80025400-80027600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:80026200-80030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:80026400-80027200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr13:80026400-80027200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:80026400-80027200	Enhancers	Dnd41	blood
9	chr13:80026400-80031400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:80026400-80031600	Weak transcription	HUVEC	blood vessel
11	chr13:80026600-80027400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr13:80026600-80032000	Weak transcription	K562	blood
13	chr13:80026800-80029000	Weak transcription	Osteobl	bone
14	chr13:80026800-80029400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:80026800-80030000	Weak transcription	HSMMtube	muscle
16	chr13:80026800-80030000	Weak transcription	NH-A	brain
17	chr13:80026800-80033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:80027000-80028000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr13:80027000-80029200	Weak transcription	HSMM	muscle
20	chr13:80027000-80030000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr13:80027000-80031200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:80027000-80031800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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