Variant report

Variant	rs11845826
Chromosome Location	chr14:77966145-77966146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:77966086-77966159	GM20000	blood:	n/a	n/a
2	TCF3	chr14:77965837-77966184	GM12878	blood:	n/a	n/a
3	POLR2A	chr14:77964840-77966187	HepG2	liver:	n/a	n/a
4	TCF12	chr14:77965970-77966161	GM12878	blood:	n/a	n/a
5	HEY1	chr14:77966024-77967040	HepG2	liver:	n/a	n/a
6	POLR2A	chr14:77966089-77966885	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77924491..77927029-chr14:77963244..77966693,3	MCF-7	breast:
2	chr14:77929404..77931486-chr14:77963841..77966397,2	MCF-7	breast:

Variant related genes	Relation type
ISM2	TF binding region
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10145540	0.87[EUR][1000 genomes]
rs11625487	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17824567	1.00[ASN][1000 genomes]
rs28651001	0.85[EUR][1000 genomes]
rs28820314	0.89[EUR][1000 genomes]
rs45480297	1.00[ASN][1000 genomes]
rs45493395	1.00[ASN][1000 genomes]
rs56099332	0.87[EUR][1000 genomes]
rs7156032	0.85[EUR][1000 genomes]
rs74063206	1.00[ASN][1000 genomes]
rs74063385	1.00[ASN][1000 genomes]
rs8006951	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3341035	chr14:77964024-77966572	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77964200-77966600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr14:77964200-77966600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr14:77964400-77966400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:77964600-77966200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr14:77964600-77966400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
6	chr14:77964800-77966200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr14:77964800-77966200	Bivalent Enhancer	Fetal Thymus	thymus
8	chr14:77965400-77966200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr14:77965600-77966200	Flanking Bivalent TSS/Enh	NHEK	skin
10	chr14:77965600-77966400	Flanking Active TSS	Placenta	Placenta
11	chr14:77965600-77966400	Enhancers	Spleen	Spleen
12	chr14:77965600-77977600	Weak transcription	Aorta	Aorta
13	chr14:77965800-77966200	Enhancers	Right Ventricle	heart
14	chr14:77965800-77966200	Bivalent Enhancer	GM12878-XiMat	blood
15	chr14:77965800-77966400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:77965800-77966400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr14:77965800-77966400	Enhancers	Esophagus	oesophagus
18	chr14:77965800-77966400	Enhancers	Gastric	stomach
19	chr14:77965800-77966400	Enhancers	Pancreas	Pancrea
20	chr14:77965800-77966600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr14:77965800-77966600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr14:77965800-77966600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:77965800-77967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:77965800-77974600	Weak transcription	A549	lung
25	chr14:77966000-77966200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:77966000-77966200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:77966000-77966200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
28	chr14:77966000-77966400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr14:77966000-77966600	Flanking Bivalent TSS/Enh	HepG2	liver
30	chr14:77966000-77973400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:77966000-77977400	Weak transcription	HMEC	breast

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