Variant report

Variant	rs11845862
Chromosome Location	chr14:69307082-69307083
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69257443..69263267-chr14:69305982..69312258,9	MCF-7	breast:
2	chr14:69259380..69263857-chr14:69306830..69310059,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11846864	0.82[AFR][1000 genomes]
rs60589455	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	nsv902071	chr14:69288432-69328594	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv902072	chr14:69288432-69329149	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv902073	chr14:69288432-69331065	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2755940	chr14:69301705-69318262	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69290200-69307200	Weak transcription	HMEC	breast
2	chr14:69300600-69307600	Strong transcription	HSMM	muscle
3	chr14:69301200-69307400	Strong transcription	NH-A	brain
4	chr14:69302200-69308200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:69303200-69307400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:69303200-69307400	Weak transcription	NHEK	skin
7	chr14:69303200-69308000	Weak transcription	Osteobl	bone
8	chr14:69303200-69310000	Weak transcription	Ovary	ovary
9	chr14:69303400-69308000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:69303600-69307200	Weak transcription	NHLF	lung
11	chr14:69304000-69307400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:69304400-69307600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:69304400-69308000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:69304800-69307200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:69305200-69307400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:69305400-69310000	Weak transcription	Right Ventricle	heart
17	chr14:69305600-69307800	Strong transcription	HSMMtube	muscle
18	chr14:69305600-69308200	Weak transcription	Fetal Stomach	stomach
19	chr14:69305800-69310200	Weak transcription	Lung	lung
20	chr14:69305800-69310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:69306400-69307400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:69306400-69307400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:69306400-69308600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:69306400-69310200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:69306400-69310600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:69306400-69331200	Weak transcription	Aorta	Aorta
27	chr14:69306600-69307800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:69306600-69307800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:69307000-69307200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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