Variant report

Variant	rs11845884
Chromosome Location	chr14:77966268-77966269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr14:77966226-77966753	HepG2	liver:	n/a	chr14:77966540-77966548 chr14:77966540-77966547 chr14:77966541-77966552
2	POLR2A	chr14:77966207-77966716	HepG2	liver:	n/a	n/a
3	POLR2A	chr14:77966186-77966622	HepG2	liver:	n/a	n/a
4	RXRA	chr14:77966247-77966702	HepG2	liver:	n/a	n/a
5	HEY1	chr14:77966024-77967040	HepG2	liver:	n/a	n/a
6	POLR2A	chr14:77966244-77966745	HepG2	liver:	n/a	n/a
7	POLR2A	chr14:77966089-77966885	HepG2	liver:	n/a	n/a
8	HEY1	chr14:77966152-77966465	HepG2	liver:	n/a	n/a
9	REST	chr14:77966214-77966519	HepG2	liver:	n/a	n/a
10	POLR2A	chr14:77966251-77966733	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77924491..77927029-chr14:77963244..77966693,3	MCF-7	breast:
2	chr14:77929404..77931486-chr14:77963841..77966397,2	MCF-7	breast:

Variant related genes	Relation type
ISM2	TF binding region
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10145609	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11159268	1.00[ASN][1000 genomes]
rs12887556	1.00[ASN][1000 genomes]
rs6574376	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8007669	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3341035	chr14:77964024-77966572	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77964200-77966600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr14:77964200-77966600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr14:77964400-77966400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:77964600-77966400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr14:77965600-77966400	Flanking Active TSS	Placenta	Placenta
6	chr14:77965600-77966400	Enhancers	Spleen	Spleen
7	chr14:77965600-77977600	Weak transcription	Aorta	Aorta
8	chr14:77965800-77966400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:77965800-77966400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr14:77965800-77966400	Enhancers	Esophagus	oesophagus
11	chr14:77965800-77966400	Enhancers	Gastric	stomach
12	chr14:77965800-77966400	Enhancers	Pancreas	Pancrea
13	chr14:77965800-77966600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr14:77965800-77966600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr14:77965800-77966600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:77965800-77967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:77965800-77974600	Weak transcription	A549	lung
18	chr14:77966000-77966400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:77966000-77966600	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr14:77966000-77973400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:77966000-77977400	Weak transcription	HMEC	breast
22	chr14:77966200-77970600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links