Variant report

Variant	rs11846098
Chromosome Location	chr14:55429575-55429576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55425546..55427837-chr14:55428745..55431370,2	K562	blood:
2	chr14:55420812..55423243-chr14:55429568..55431730,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11844338	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847317	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11848698	1.00[AMR][1000 genomes]
rs28513529	1.00[MEX][hapmap]
rs28532361	1.00[AMR][1000 genomes]
rs7151285	1.00[MEX][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155099	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7156068	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8008935	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1038242	chr14:55398559-55444839	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3378942	chr14:55412251-55440744	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55394200-55443000	Weak transcription	HSMMtube	muscle
2	chr14:55403000-55449000	Weak transcription	Gastric	stomach
3	chr14:55403200-55442600	Weak transcription	NHEK	skin
4	chr14:55403200-55442800	Weak transcription	NHDF-Ad	bronchial
5	chr14:55407400-55442800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:55411000-55477000	Weak transcription	Left Ventricle	heart
7	chr14:55412400-55453400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:55412600-55433600	Weak transcription	HepG2	liver
9	chr14:55414000-55433800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:55414400-55429800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:55415200-55450000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:55415400-55443000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:55416000-55442600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:55418600-55492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:55419400-55442800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:55419400-55443000	Weak transcription	NH-A	brain
17	chr14:55419800-55480400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr14:55420000-55471600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:55420200-55431400	Weak transcription	Small Intestine	intestine
20	chr14:55420200-55435200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:55420400-55435600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:55420600-55434000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:55420600-55434600	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr14:55420600-55434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:55420600-55434800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:55420600-55435000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:55420600-55435000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:55420600-55435200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr14:55420600-55435400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:55420600-55435800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:55420600-55437000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr14:55420600-55438400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:55420800-55437000	Strong transcription	Dnd41	blood
34	chr14:55421200-55431400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:55421400-55430600	Weak transcription	Ovary	ovary
36	chr14:55421600-55435200	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:55421800-55436200	Weak transcription	Spleen	Spleen
38	chr14:55421800-55481400	Weak transcription	Placenta	Placenta
39	chr14:55421800-55492800	Weak transcription	Aorta	Aorta
40	chr14:55422000-55432000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr14:55422000-55435200	Weak transcription	Right Ventricle	heart
42	chr14:55422400-55492400	Weak transcription	Fetal Kidney	kidney
43	chr14:55422600-55430400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:55423200-55429600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:55424000-55435000	Weak transcription	Fetal Brain Male	brain
46	chr14:55424000-55443000	Weak transcription	NHLF	lung
47	chr14:55424200-55476800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:55424800-55442800	Weak transcription	Osteobl	bone
49	chr14:55425200-55429800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:55425200-55429800	Strong transcription	Fetal Thymus	thymus

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