Variant report

Variant	rs11846259
Chromosome Location	chr14:70928850-70928851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1892282	0.89[ASN][1000 genomes]
rs2050720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877662	0.95[ASN][1000 genomes]
rs2877663	0.88[ASN][1000 genomes]
rs4641669	0.97[ASN][1000 genomes]
rs4899352	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4902821	0.95[ASN][1000 genomes]
rs59261726	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59458224	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74062713	0.99[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11846259	FUT8	cis	parietal	SCAN
rs11846259	PAPLN	cis	parietal	SCAN
rs11846259	ZNF826P	trans	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
2	chr14:70917000-70940200	Weak transcription	Aorta	Aorta
3	chr14:70921800-70940000	Weak transcription	Psoas Muscle	Psoas
4	chr14:70925800-70929000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70928800-70929600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:70928800-70930200	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links