Variant report

Variant	rs11846437
Chromosome Location	chr14:32570237-32570238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32568963..32573107-chr14:32575229..32577202,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11844095	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848679	1.00[CEU][hapmap]
rs11851731	0.86[AFR][1000 genomes]
rs2149664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32547600-32571400	Weak transcription	Spleen	Spleen
2	chr14:32548000-32586200	Weak transcription	Lung	lung
3	chr14:32548000-32597400	Weak transcription	Esophagus	oesophagus
4	chr14:32548400-32571200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:32548600-32584000	Weak transcription	Fetal Stomach	stomach
6	chr14:32548800-32570600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:32548800-32571600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:32548800-32572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:32549000-32574000	Weak transcription	Aorta	Aorta
10	chr14:32549200-32570800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:32549200-32571600	Weak transcription	K562	blood
12	chr14:32551000-32574000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:32552000-32573600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:32552000-32596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:32554600-32597200	Weak transcription	Gastric	stomach
16	chr14:32555000-32579600	Weak transcription	NHLF	lung
17	chr14:32555600-32570800	Weak transcription	GM12878-XiMat	blood
18	chr14:32555600-32571400	Weak transcription	Small Intestine	intestine
19	chr14:32555600-32573600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:32555800-32570400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr14:32557400-32573400	Weak transcription	Stomach Mucosa	stomach
22	chr14:32557800-32571400	Weak transcription	Thymus	Thymus
23	chr14:32557800-32571600	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:32559400-32571200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:32559600-32572000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:32559800-32570800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:32559800-32570800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:32560000-32576000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:32560400-32571400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr14:32560400-32571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:32561600-32570800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:32561800-32571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:32562000-32571000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:32562200-32579200	Weak transcription	HSMMtube	muscle
35	chr14:32562400-32578400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr14:32562400-32588200	Weak transcription	Brain Germinal Matrix	brain
37	chr14:32562600-32570400	Weak transcription	Primary T cells from cord blood	blood
38	chr14:32562600-32571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:32562600-32571400	Weak transcription	Brain Substantia Nigra	brain
40	chr14:32562600-32574000	Weak transcription	Adipose Nuclei	Adipose
41	chr14:32562600-32575600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:32562600-32583400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:32562600-32586600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:32562600-32595200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:32562600-32597600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr14:32562800-32571000	Weak transcription	Fetal Thymus	thymus
47	chr14:32562800-32576600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:32563000-32571200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr14:32563000-32571200	Weak transcription	Fetal Brain Male	brain
50	chr14:32563000-32571400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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