Variant report

Variant	rs11846441
Chromosome Location	chr14:68195402-68195403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68193596..68197336-chr14:68281825..68284541,3	MCF-7	breast:
2	chr14:68195174..68196845-chr14:68200737..68203041,2	K562	blood:
3	chr14:68186603..68190707-chr14:68192396..68197182,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139988	Chromatin interaction
ENSG00000271697	Chromatin interaction
ENSG00000072121	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10131884	0.86[ASW][hapmap]
rs10131990	0.91[YRI][hapmap]
rs10134090	0.86[ASW][hapmap]
rs10139933	0.91[YRI][hapmap]
rs10140733	0.86[ASW][hapmap]
rs10144907	0.86[ASW][hapmap]
rs1018450	1.00[AMR][1000 genomes]
rs1474796	0.86[ASW][hapmap];0.86[LWK][hapmap]
rs17104512	0.86[ASW][hapmap]
rs2320028	0.86[ASW][hapmap];0.86[LWK][hapmap]
rs2320030	1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899215	1.00[AMR][1000 genomes]
rs4899223	0.86[ASW][hapmap]
rs7159735	1.00[YRI][hapmap]
rs8016383	1.00[AMR][1000 genomes]
rs8017085	0.86[ASW][hapmap];0.87[LWK][hapmap]
rs8017597	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv521832	chr14:68141009-68204876	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68189000-68218800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:68189400-68200800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:68189600-68196000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:68189600-68196400	Weak transcription	Brain Anterior Caudate	brain
5	chr14:68189800-68213400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:68192400-68195800	Weak transcription	Pancreas	Pancrea
7	chr14:68193800-68199000	Weak transcription	Aorta	Aorta
8	chr14:68194000-68195800	Weak transcription	Esophagus	oesophagus
9	chr14:68194000-68202200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:68194800-68195800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:68194800-68195800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:68195000-68195600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr14:68195000-68195600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:68195000-68195600	Enhancers	Liver	Liver
15	chr14:68195000-68195600	Enhancers	HepG2	liver
16	chr14:68195000-68197000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:68195200-68195800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr14:68195200-68197200	Enhancers	Fetal Brain Male	brain
19	chr14:68195400-68195600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:68195400-68195800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr14:68195400-68195800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr14:68195400-68195800	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:68195400-68196200	Enhancers	Stomach Mucosa	stomach
24	chr14:68195400-68196600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr14:68195400-68196800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr14:68195400-68197200	Enhancers	Fetal Intestine Small	intestine

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