Variant report

Variant	rs11846471
Chromosome Location	chr14:81812956-81812957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11846655	0.84[ASW][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv902119	chr14:81810945-81884857	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81803800-81832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81804200-81820000	Weak transcription	K562	blood
3	chr14:81804800-81814200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:81805800-81814000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:81806000-81814200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:81808000-81820600	Weak transcription	Fetal Kidney	kidney
7	chr14:81808400-81829200	Weak transcription	HMEC	breast
8	chr14:81808600-81820200	Weak transcription	NHEK	skin
9	chr14:81808800-81830200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:81809000-81813000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:81809400-81817600	Weak transcription	Brain Anterior Caudate	brain
12	chr14:81810400-81814200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:81811800-81818800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:81811800-81821000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:81812200-81813000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr14:81812200-81820000	Weak transcription	Psoas Muscle	Psoas
17	chr14:81812600-81813400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links