Variant report

Variant	rs11846663
Chromosome Location	chr14:81983134-81983135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81982519..81985151-chr14:81994400..81995945,2	K562	blood:
2	chr14:81982742..81984262-chr14:81989841..81992728,2	MCF-7	breast:
3	chr14:81982643..81985778-chr14:81998621..82001086,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071537	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11846082	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11846666	1.00[AMR][1000 genomes]
rs11848548	0.83[AMR][1000 genomes]
rs11851475	0.81[LWK][hapmap];1.00[AMR][1000 genomes]
rs12883451	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7154698	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158459	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158559	1.00[AMR][1000 genomes]
rs8008992	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020513	1.00[AMR][1000 genomes]
rs8022069	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81941800-81985600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:81960200-81983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:81960400-81985800	Weak transcription	Stomach Mucosa	stomach
4	chr14:81964200-81985200	Weak transcription	K562	blood
5	chr14:81967600-81999600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:81970400-81983200	Weak transcription	Hela-S3	cervix
7	chr14:81970800-81983200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:81971200-81983600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:81972600-81983600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:81972600-81987000	Weak transcription	NH-A	brain
11	chr14:81972600-81989800	Weak transcription	HMEC	breast
12	chr14:81972800-81983200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:81973800-81983200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:81973800-81988800	Weak transcription	Spleen	Spleen
15	chr14:81973800-81999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:81973800-81999400	Weak transcription	Esophagus	oesophagus
17	chr14:81974200-81983200	Weak transcription	Gastric	stomach
18	chr14:81974200-81983400	Weak transcription	HSMM	muscle
19	chr14:81974800-81985400	Weak transcription	HUVEC	blood vessel
20	chr14:81974800-81985600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:81974800-81998200	Weak transcription	Fetal Brain Male	brain
22	chr14:81976000-81983200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:81976600-81983200	Weak transcription	Right Atrium	heart
24	chr14:81976600-81984200	Weak transcription	Small Intestine	intestine
25	chr14:81977600-81983400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:81977600-81985200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:81977600-81985600	Strong transcription	Primary T cells from cord blood	blood
28	chr14:81977800-81983400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:81978000-81983200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr14:81978000-81983200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:81978200-81983200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:81978200-81983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:81978200-81985600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:81978400-81983400	Strong transcription	Fetal Muscle Leg	muscle
35	chr14:81978400-81984400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr14:81978400-81984600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr14:81978600-81983400	Strong transcription	Fetal Lung	lung
38	chr14:81978600-81983600	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr14:81978600-81984200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr14:81978600-81984600	Strong transcription	Thymus	Thymus
41	chr14:81978600-81985600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:81978800-81983200	Strong transcription	Fetal Stomach	stomach
43	chr14:81979000-81985600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:81979000-81985600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:81979200-81983200	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:81979200-81983200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr14:81979200-81985200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr14:81979400-81983600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr14:81979400-81985000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:81979600-81984000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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