Variant report

Variant	rs11846733
Chromosome Location	chr14:68732705-68732706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68732676..68734523-chr14:68737095..68739860,2	MCF-7	breast:
2	chr14:68730539..68732765-chr14:68733747..68736318,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11847821	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849946	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105291	0.96[AFR][1000 genomes]
rs1957571	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899235	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902563	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60324261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61274387	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68722400-68739800	Weak transcription	Gastric	stomach
2	chr14:68723400-68736000	Weak transcription	Aorta	Aorta
3	chr14:68726000-68734600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:68728400-68733000	Enhancers	GM12878-XiMat	blood
5	chr14:68729000-68734400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:68729200-68732800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:68729200-68733600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:68729200-68749400	Weak transcription	Lung	lung
9	chr14:68729400-68734800	Weak transcription	Thymus	Thymus
10	chr14:68730000-68734200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:68730000-68734400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:68730000-68734400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:68730000-68734600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr14:68730000-68734600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:68730000-68745000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:68730200-68734600	Weak transcription	Fetal Thymus	thymus
17	chr14:68730600-68732800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:68731000-68733800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:68731000-68734200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:68731000-68735600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:68731200-68732800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:68731200-68732800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:68731200-68733200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr14:68731200-68734600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:68731200-68734600	Weak transcription	Fetal Heart	heart
26	chr14:68731200-68734800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:68731200-68735000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:68731200-68735400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:68731200-68735400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:68731200-68735600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:68731200-68736000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:68731400-68734600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:68731400-68736400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:68731600-68732800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr14:68731600-68734400	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:68731600-68734600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:68731600-68734600	Weak transcription	Fetal Intestine Small	intestine
38	chr14:68731600-68735600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:68731600-68735800	Weak transcription	Fetal Muscle Leg	muscle
40	chr14:68731600-68746000	Enhancers	Primary B cells from peripheral blood	blood
41	chr14:68731800-68733000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr14:68731800-68733000	Weak transcription	Adipose Nuclei	Adipose
43	chr14:68731800-68733800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr14:68731800-68734400	Weak transcription	Fetal Kidney	kidney
45	chr14:68731800-68734600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:68731800-68734600	Weak transcription	Fetal Intestine Large	intestine
47	chr14:68731800-68734600	Weak transcription	Fetal Stomach	stomach
48	chr14:68731800-68734600	Weak transcription	Small Intestine	intestine
49	chr14:68731800-68735800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr14:68731800-68749000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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