Variant report

Variant	rs11846917
Chromosome Location	chr14:85439136-85439137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11844305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11844310	1.00[AMR][1000 genomes]
rs11848156	1.00[AMR][1000 genomes]
rs11849268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849412	1.00[AMR][1000 genomes]
rs11849431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11850540	1.00[AMR][1000 genomes]
rs11851021	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv565423	chr14:85427846-85638746	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85436600-85442000	Weak transcription	HMEC	breast
2	chr14:85438600-85439400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:85438600-85439600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:85439000-85439400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:85439000-85439400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:85439000-85439400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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