Variant report

Variant	rs11846931
Chromosome Location	chr14:64627582-64627583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12432334	0.91[MKK][hapmap];1.00[AFR][1000 genomes]
rs1268656	0.81[MKK][hapmap]
rs17101562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
7	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:64586400-64631800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:64590200-64634000	Weak transcription	HepG2	liver
10	chr14:64591000-64649000	Strong transcription	Liver	Liver
11	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
14	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:64609800-64633200	Weak transcription	Small Intestine	intestine
16	chr14:64609800-64636600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:64610600-64651000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:64612600-64640000	Strong transcription	Dnd41	blood
20	chr14:64612800-64640000	Strong transcription	Primary T cells from cord blood	blood
21	chr14:64613800-64635400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:64614000-64628800	Weak transcription	Right Ventricle	heart
23	chr14:64614000-64635600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:64614200-64628800	Weak transcription	Gastric	stomach
25	chr14:64614200-64635400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:64614200-64636000	Weak transcription	Hela-S3	cervix
27	chr14:64614200-64637000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:64614600-64631800	Weak transcription	NH-A	brain
29	chr14:64614800-64644400	Weak transcription	HSMM	muscle
30	chr14:64616000-64628600	Weak transcription	Colonic Mucosa	Colon
31	chr14:64617600-64649000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:64617800-64649000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr14:64620000-64629000	Weak transcription	Fetal Thymus	thymus
34	chr14:64620000-64634000	Weak transcription	Colon Smooth Muscle	Colon
35	chr14:64620000-64651200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:64620400-64627600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr14:64620400-64628800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:64620400-64634000	Weak transcription	Spleen	Spleen
39	chr14:64620400-64634000	Weak transcription	HMEC	breast
40	chr14:64620400-64653000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:64620800-64633600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:64621800-64631200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr14:64621800-64631600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:64622600-64628200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:64622600-64628800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:64623000-64628200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:64623000-64628800	Weak transcription	Thymus	Thymus
48	chr14:64623800-64627800	Weak transcription	Fetal Intestine Small	intestine
49	chr14:64624200-64640400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:64624400-64628800	Weak transcription	Ovary	ovary

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