Variant report

Variant	rs11847025
Chromosome Location	chr14:78261571-78261572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78173247..78175139-chr14:78259767..78262393,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119705	Chromatin interaction
ENSG00000100601	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1006038	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1006039	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1006040	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1008988	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10142722	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10148373	0.84[EUR][1000 genomes]
rs11159288	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11628888	0.81[AMR][1000 genomes]
rs12435761	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12887282	0.82[EUR][1000 genomes]
rs12887606	0.82[EUR][1000 genomes]
rs1477259	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1477260	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1477261	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1477262	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1549119	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs176943	0.81[AMR][1000 genomes]
rs176944	0.80[EUR][1000 genomes]
rs176946	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs176951	0.80[EUR][1000 genomes]
rs176952	0.80[EUR][1000 genomes]
rs176955	0.80[EUR][1000 genomes]
rs176960	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs176962	0.85[AMR][1000 genomes]
rs176966	0.80[EUR][1000 genomes]
rs176971	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs176979	0.82[EUR][1000 genomes]
rs176980	0.82[EUR][1000 genomes]
rs1978416	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1984925	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2032781	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2112136	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2267767	0.82[EUR][1000 genomes]
rs2267768	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2299930	0.83[AMR][1000 genomes]
rs3759728	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3783980	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4383070	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4632066	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4903643	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55909252	0.83[AMR][1000 genomes]
rs56017708	0.83[AMR][1000 genomes]
rs57635466	0.83[AMR][1000 genomes]
rs6574391	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574402	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7142390	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs717683	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs759808	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8003691	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8003979	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8011337	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8014635	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8016175	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8016447	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8018741	0.89[AMR][1000 genomes]
rs8018971	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv2754594	chr14:78222798-78275549	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78253600-78261800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:78253800-78266200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:78257400-78262000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:78258000-78261800	Weak transcription	HMEC	breast
5	chr14:78258000-78262000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:78258000-78262000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:78258000-78262200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:78258200-78262000	Weak transcription	Placenta	Placenta
9	chr14:78258200-78262000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr14:78258200-78262000	Weak transcription	HepG2	liver
11	chr14:78258200-78262200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:78258200-78262200	Weak transcription	NHEK	skin
13	chr14:78258400-78261800	Weak transcription	Hela-S3	cervix
14	chr14:78259600-78266200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:78260800-78262000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:78260800-78262200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr14:78261000-78262000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:78261000-78262200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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