Variant report

Variant	rs11850259
Chromosome Location	chr14:20645916-20645917
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:50)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:50 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr14:20645563-20645927	K562	blood:	n/a	n/a
2	GATA2	chr14:20645567-20645948	K562	blood:	n/a	n/a
3	BHLHE40	chr14:20645542-20646303	K562	blood:	n/a	n/a
4	SP1	chr14:20645492-20645968	K562	blood:	n/a	n/a
5	ZNF274	chr14:20645592-20646009	K562	blood:	n/a	n/a
6	POLR2A	chr14:20645492-20646010	K562	blood:	n/a	n/a
7	POLR2A	chr14:20645539-20645990	K562	blood:	n/a	n/a
8	EP300	chr14:20645741-20646109	GM12878	blood:	n/a	n/a
9	TBP	chr14:20645632-20646188	K562	blood:	n/a	n/a
10	TEAD4	chr14:20645413-20646311	K562	blood:	n/a	n/a
11	ZMIZ1	chr14:20645573-20646234	K562	blood:	n/a	n/a
12	GATA2	chr14:20645571-20645945	K562	blood:	n/a	n/a
13	RCOR1	chr14:20645608-20645944	K562	blood:	n/a	n/a
14	PML	chr14:20645514-20646075	K562	blood:	n/a	n/a
15	TAL1	chr14:20645498-20646448	K562	blood:	n/a	n/a
16	CBX3	chr14:20645515-20645980	K562	blood:	n/a	n/a
17	GATA1	chr14:20645409-20646512	PBDE	blood:	n/a	n/a
18	ARID3A	chr14:20645562-20646086	K562	blood:	n/a	n/a
19	CCNT2	chr14:20645714-20646195	K562	blood:	n/a	n/a
20	MAZ	chr14:20645619-20646115	K562	blood:	n/a	n/a
21	TEAD4	chr14:20645561-20646189	K562	blood:	n/a	n/a
22	ZNF143	chr14:20645616-20646186	K562	blood:	n/a	n/a
23	PML	chr14:20645472-20646034	K562	blood:	n/a	n/a
24	HMGN3	chr14:20645773-20646216	K562	blood:	n/a	n/a
25	ATF1	chr14:20645594-20645932	K562	blood:	n/a	n/a
26	GABPA	chr14:20645531-20645921	K562	blood:	n/a	n/a
27	POLR2A	chr14:20645594-20645925	K562	blood:	n/a	n/a
28	NR2F2	chr14:20645422-20646143	K562	blood:	n/a	n/a
29	TBL1XR1	chr14:20645634-20645920	K562	blood:	n/a	n/a
30	CUX1	chr14:20645692-20645947	K562	blood:	n/a	n/a
31	NR2F2	chr14:20645486-20645960	K562	blood:	n/a	n/a
32	TBL1XR1	chr14:20645571-20646006	K562	blood:	n/a	n/a
33	RCOR1	chr14:20645549-20646359	K562	blood:	n/a	n/a
34	CEBPB	chr14:20645527-20645985	K562	blood:	n/a	n/a
35	EP300	chr14:20645503-20646516	K562	blood:	n/a	n/a
36	POLR2A	chr14:20645518-20645947	K562	blood:	n/a	n/a
37	TRIM28	chr14:20645404-20646060	K562	blood:	n/a	n/a
38	JUN	chr14:20645416-20646693	K562	blood:	n/a	n/a
39	MYC	chr14:20645572-20646292	K562	blood:	n/a	n/a
40	IRF1	chr14:20645604-20646000	K562	blood:	n/a	n/a
41	EP300	chr14:20645607-20645980	K562	blood:	n/a	n/a
42	GATA1	chr14:20645375-20646637	K562	blood:	n/a	n/a
43	CEBPB	chr14:20645573-20645988	K562	blood:	n/a	n/a
44	GATA2	chr14:20645481-20646083	K562	blood:	n/a	n/a
45	JUND	chr14:20645543-20645980	K562	blood:	n/a	n/a
46	GATA1	chr14:20645694-20645960	PBDEFetal	blood:	n/a	n/a
47	CEBPD	chr14:20645568-20646098	K562	blood:	n/a	n/a
48	STAT5A	chr14:20645411-20646055	K562	blood:	n/a	n/a
49	CEBPD	chr14:20645540-20645977	K562	blood:	n/a	n/a
50	STAT5A	chr14:20645480-20646007	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:20623640..20625607-chr14:20644962..20647182,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259095	TF binding region
OR11G1P	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10484229	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1958701	0.81[JPT][hapmap];0.84[MEX][hapmap]
rs5009637	0.81[JPT][hapmap]
rs7143050	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901299	chr14:20191869-20756887	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv430745	chr14:20203125-20655466	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv2751268	chr14:20203125-20716841	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
5	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
6	nsv563812	chr14:20404091-20694968	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv1043938	chr14:20427182-20776276	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv541971	chr14:20427182-20776276	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	nsv563829	chr14:20445370-20694968	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv428618	chr14:20500951-20660726	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
12	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
13	nsv1037890	chr14:20537751-20669240	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv2761819	chr14:20577698-20677591	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv832739	chr14:20604126-20734222	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
16	nsv977615	chr14:20643351-20673001	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20645200-20646400	Enhancers	Pancreas	Pancrea
2	chr14:20645800-20646400	Flanking Active TSS	K562	blood

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