Variant report

Variant	rs11851576
Chromosome Location	chr14:65900283-65900284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65879008..65881327-chr14:65899044..65901379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10483780	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11158593	0.80[CEU][hapmap]
rs11158596	0.91[ASN][1000 genomes]
rs11158601	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11158602	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11620749	0.99[ASN][1000 genomes]
rs11621680	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11627084	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11628196	0.99[ASN][1000 genomes]
rs12589698	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12879202	0.87[ASN][1000 genomes]
rs12879971	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12882269	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs12883815	0.91[ASN][1000 genomes]
rs12887134	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12889002	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12890123	0.81[ASN][1000 genomes]
rs12890978	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12892058	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1815654	0.86[ASN][1000 genomes]
rs1953416	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1958561	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2002692	0.99[ASN][1000 genomes]
rs2149841	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2184603	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2411816	0.83[ASN][1000 genomes]
rs2411822	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3783709	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3825640	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4456409	0.86[ASN][1000 genomes]
rs4581615	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4899179	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4902400	0.85[ASN][1000 genomes]
rs67071794	0.92[ASN][1000 genomes]
rs7146742	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7154536	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7155541	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7161123	0.83[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs743085	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs8012278	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs867972	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs883081	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs883082	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:65888400-65905400	Weak transcription	Ovary	ovary
8	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:65891200-65900400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:65891600-65904000	Weak transcription	Lung	lung
11	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:65893600-65902200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
16	chr14:65898000-65901200	Enhancers	Dnd41	blood
17	chr14:65898400-65900800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:65898400-65901400	Enhancers	Osteobl	bone
19	chr14:65898400-65901600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr14:65898400-65935600	Weak transcription	Gastric	stomach
21	chr14:65898600-65900800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:65898800-65900400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr14:65898800-65900400	Enhancers	Adipose Nuclei	Adipose
24	chr14:65898800-65901200	Enhancers	Primary B cells from peripheral blood	blood
25	chr14:65898800-65901200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr14:65899000-65901000	Enhancers	Brain Cingulate Gyrus	brain
27	chr14:65899000-65902200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr14:65899000-65903600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr14:65899200-65900600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:65899200-65900600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr14:65899200-65901200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr14:65899200-65901600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:65899400-65900400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr14:65899400-65901000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:65899400-65901200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:65899400-65901400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr14:65899400-65901800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr14:65899600-65900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:65899600-65900400	Weak transcription	Brain Substantia Nigra	brain
41	chr14:65899600-65900400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr14:65899600-65900800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:65899600-65900800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:65899600-65900800	Weak transcription	Right Atrium	heart
45	chr14:65899600-65901000	Flanking Active TSS	GM12878-XiMat	blood
46	chr14:65899600-65901400	Enhancers	Brain Angular Gyrus	brain
47	chr14:65899600-65901600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:65899600-65901800	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr14:65899600-65905200	Weak transcription	Psoas Muscle	Psoas
50	chr14:65899600-65909600	Weak transcription	Left Ventricle	heart

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