Variant report

Variant	rs11852387
Chromosome Location	chr15:100269613-100269614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100266948..100268782-chr15:100268887..100270856,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1031484	0.91[ASN][1000 genomes]
rs10438468	0.91[ASN][1000 genomes]
rs1470923	0.97[EUR][1000 genomes]
rs59118491	0.91[ASN][1000 genomes]
rs66640767	0.91[ASN][1000 genomes]
rs7175181	0.91[ASN][1000 genomes]
rs8029516	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904560	chr15:100196657-100339331	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv904561	chr15:100204918-100486828	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv428313	chr15:100236203-100757039	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv904563	chr15:100239546-100274747	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv570730	chr15:100240910-100700520	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1045838	chr15:100243067-101032218	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv904564	chr15:100245296-100723798	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv932678	chr15:100250311-101012358	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100244600-100272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:100249600-100272800	Weak transcription	Small Intestine	intestine
3	chr15:100249800-100272200	Weak transcription	HUVEC	blood vessel
4	chr15:100251800-100271800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:100252200-100271400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:100253000-100271800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:100253600-100272400	Weak transcription	Stomach Mucosa	stomach
8	chr15:100257600-100270400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:100258000-100272000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:100259200-100270200	Weak transcription	Fetal Kidney	kidney
11	chr15:100259800-100272200	Weak transcription	Osteobl	bone
12	chr15:100260000-100270000	Weak transcription	NHDF-Ad	bronchial
13	chr15:100261600-100272400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:100261800-100272000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:100261800-100272000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:100261800-100272600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:100262000-100272200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:100262000-100272400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:100262200-100272400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:100262800-100270000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:100262800-100272400	Weak transcription	Primary B cells from cord blood	blood
22	chr15:100265400-100272000	Weak transcription	Hela-S3	cervix
23	chr15:100265800-100271400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:100266000-100269800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:100266000-100269800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:100266200-100270400	Weak transcription	Fetal Brain Male	brain
27	chr15:100266200-100272200	Weak transcription	NH-A	brain
28	chr15:100266200-100272400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:100266400-100271400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr15:100266600-100269800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:100266600-100271600	Strong transcription	Fetal Thymus	thymus
32	chr15:100266800-100269800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:100267000-100269800	Genic enhancers	Fetal Muscle Trunk	muscle
34	chr15:100267000-100270000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:100267000-100271400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:100267200-100269800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr15:100267200-100269800	Strong transcription	Esophagus	oesophagus
38	chr15:100267200-100270200	Genic enhancers	Fetal Muscle Leg	muscle
39	chr15:100267600-100269800	Strong transcription	Fetal Brain Female	brain
40	chr15:100267600-100269800	Strong transcription	NHLF	lung
41	chr15:100267600-100272400	Enhancers	Fetal Heart	heart
42	chr15:100267800-100269800	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr15:100267800-100269800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr15:100267800-100269800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:100267800-100269800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:100267800-100269800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:100267800-100269800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr15:100267800-100269800	Strong transcription	Ovary	ovary
49	chr15:100268000-100269800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:100268000-100269800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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