Variant report

Variant	rs11852722
Chromosome Location	chr15:31246654-31246655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:31245914-31247354	A549	lung:	n/a	chr15:31246721-31246734
2	FOSL2	chr15:31246288-31246656	A549	lung:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
3	MAX	chr15:31246073-31246680	Hela-S3	cervix:	n/a	chr15:31246261-31246272 chr15:31246262-31246271 chr15:31246508-31246517 chr15:31246526-31246542
4	MAX	chr15:31246256-31246680	SK-N-SH	brain:	n/a	chr15:31246261-31246272 chr15:31246262-31246271 chr15:31246508-31246517 chr15:31246526-31246542
5	TCF7L2	chr15:31246456-31246655	MCF-7	breast:	n/a	chr15:31246524-31246538 chr15:31246508-31246517
6	FOSL2	chr15:31246108-31246840	SK-N-SH	brain:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
7	FOS	chr15:31246183-31246710	HUVEC	blood vessel:	n/a	chr15:31246507-31246516 chr15:31246506-31246517 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
8	RCOR1	chr15:31246183-31246657	K562	blood:	n/a	n/a
9	MXI1	chr15:31246084-31246687	Hela-S3	cervix:	n/a	n/a
10	PBX3	chr15:31246246-31246828	SK-N-SH	brain:	n/a	n/a
11	FOS	chr15:31246286-31247220	MCF10A-Er-Src	breast:	n/a	chr15:31246507-31246516 chr15:31246506-31246517 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
12	TCF12	chr15:31246157-31246878	SK-N-SH	brain:	n/a	chr15:31246214-31246224
13	JUND	chr15:31246088-31246697	A549	lung:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246506-31246517 chr15:31246508-31246517
14	JUND	chr15:31246243-31246670	K562	blood:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246506-31246517 chr15:31246508-31246517
15	MAX	chr15:31245848-31246820	A549	lung:	n/a	chr15:31246724-31246733 chr15:31246261-31246272 chr15:31246262-31246271 chr15:31246508-31246517 chr15:31246526-31246542
16	MYC	chr15:31246289-31247090	MCF10A-Er-Src	breast:	n/a	chr15:31246724-31246733 chr15:31246508-31246517 chr15:31246526-31246542
17	GATA3	chr15:31246033-31246893	SK-N-SH	brain:	n/a	n/a
18	CEBPB	chr15:31246012-31247292	Hela-S3	cervix:	n/a	chr15:31246721-31246734
19	GATA3	chr15:31245873-31247387	A549	lung:	n/a	chr15:31247247-31247263
20	TCF12	chr15:31245926-31246870	SK-N-SH	brain:	n/a	chr15:31246214-31246224
21	ARID3A	chr15:31246394-31246733	K562	blood:	n/a	n/a
22	FOS	chr15:31246320-31246673	MCF10A-Er-Src	breast:	n/a	chr15:31246507-31246516 chr15:31246506-31246517 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
23	FOSL2	chr15:31246266-31246709	SK-N-SH	brain:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
24	FOSL2	chr15:31246080-31246802	A549	lung:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
25	SP1	chr15:31245837-31246776	A549	lung:	n/a	chr15:31246369-31246379 chr15:31246225-31246234 chr15:31246368-31246380 chr15:31246220-31246229 chr15:31246369-31246379 chr15:31246369-31246378 chr15:31246369-31246378 chr15:31246370-31246379 chr15:31246368-31246380 chr15:31246225-31246235
26	FOS	chr15:31246260-31247232	MCF10A-Er-Src	breast:	n/a	chr15:31246507-31246516 chr15:31246506-31246517 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
27	EP300	chr15:31246063-31246668	A549	lung:	n/a	chr15:31246508-31246517
28	GATA3	chr15:31246137-31246813	SK-N-SH	brain:	n/a	n/a
29	MYC	chr15:31246193-31246778	MCF10A-Er-Src	breast:	n/a	chr15:31246724-31246733 chr15:31246261-31246272 chr15:31246262-31246271 chr15:31246508-31246517 chr15:31246526-31246542
30	MAX	chr15:31246067-31246657	Hela-S3	cervix:	n/a	chr15:31246261-31246272 chr15:31246262-31246271 chr15:31246508-31246517 chr15:31246526-31246542
31	MAX	chr15:31245862-31246755	A549	lung:	n/a	chr15:31246724-31246733 chr15:31246261-31246272 chr15:31246262-31246271 chr15:31246508-31246517 chr15:31246526-31246542
32	USF2	chr15:31245998-31246660	Hela-S3	cervix:	n/a	chr15:31246260-31246271
33	MAX	chr15:31246091-31246773	SK-N-SH	brain:	n/a	chr15:31246724-31246733 chr15:31246261-31246272 chr15:31246262-31246271 chr15:31246508-31246517 chr15:31246526-31246542
34	FOS	chr15:31246286-31246683	MCF10A-Er-Src	breast:	n/a	chr15:31246507-31246516 chr15:31246506-31246517 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
35	USF1	chr15:31246066-31246682	A549	lung:	n/a	n/a
36	TCF12	chr15:31245887-31246882	A549	lung:	n/a	chr15:31246214-31246224
37	PBX3	chr15:31246236-31246693	SK-N-SH	brain:	n/a	n/a
38	JUND	chr15:31246216-31246685	A549	lung:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246506-31246517 chr15:31246508-31246517
39	FOSL1	chr15:31246171-31246744	HCT-116	colon:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
40	JUND	chr15:31246136-31246873	SK-N-SH	brain:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246506-31246517 chr15:31246508-31246517
41	JUN	chr15:31246032-31246828	K562	blood:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246508-31246517
42	SP1	chr15:31245931-31246669	A549	lung:	n/a	chr15:31246369-31246379 chr15:31246225-31246234 chr15:31246368-31246380 chr15:31246220-31246229 chr15:31246369-31246379 chr15:31246369-31246378 chr15:31246369-31246378 chr15:31246370-31246379 chr15:31246368-31246380 chr15:31246225-31246235
43	RCOR1	chr15:31245966-31246671	Hela-S3	cervix:	n/a	n/a
44	RFX5	chr15:31246039-31247189	Hela-S3	cervix:	n/a	n/a
45	MAFK	chr15:31246250-31246669	K562	blood:	n/a	n/a
46	JUND	chr15:31246028-31247204	Hela-S3	cervix:	n/a	chr15:31246507-31246516 chr15:31246453-31246463 chr15:31246453-31246463 chr15:31246506-31246517 chr15:31246508-31246517

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31244834..31247822-chr15:31248238..31251103,2	K562	blood:
2	chr15:31237800..31239595-chr15:31245013..31246822,2	K562	blood:

Variant related genes	Relation type
MTMR10	TF binding region
ENSG00000212526	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56261464	1.00[AMR][1000 genomes]
rs57516048	1.00[AMR][1000 genomes]
rs6493358	0.90[YRI][hapmap]
rs73381333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
8	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
13	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
16	nsv832952	chr15:31204426-31333998	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31200600-31254800	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr15:31221000-31246800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr15:31225400-31255800	Strong transcription	Fetal Intestine Large	intestine
4	chr15:31225600-31253800	Strong transcription	Dnd41	blood
5	chr15:31225800-31256000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:31226000-31255800	Strong transcription	Fetal Stomach	stomach
7	chr15:31226000-31258800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr15:31226200-31246800	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:31226200-31269200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:31226400-31260800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr15:31226600-31254400	Strong transcription	Fetal Thymus	thymus
12	chr15:31226600-31255200	Strong transcription	Duodenum Smooth Muscle	Duodenum
13	chr15:31227000-31269600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr15:31227200-31255800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:31227200-31258800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:31228400-31253600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:31228400-31254400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr15:31228400-31254600	Strong transcription	Thymus	Thymus
19	chr15:31228600-31253200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:31228600-31258800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr15:31229000-31254800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:31229200-31261000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr15:31230400-31258800	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:31233200-31247400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr15:31233400-31269200	Strong transcription	Liver	Liver
26	chr15:31236000-31248400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:31236200-31250000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:31236600-31255000	Strong transcription	Rectal Smooth Muscle	rectum
29	chr15:31237200-31269600	Strong transcription	Primary B cells from cord blood	blood
30	chr15:31238200-31254600	Strong transcription	Fetal Lung	lung
31	chr15:31238600-31255200	Strong transcription	Fetal Kidney	kidney
32	chr15:31240000-31247800	Strong transcription	Brain Substantia Nigra	brain
33	chr15:31240400-31255000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:31241400-31254600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:31241800-31247400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:31242000-31282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:31242200-31251600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:31242200-31253400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:31242200-31254600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:31242400-31255800	Strong transcription	Fetal Intestine Small	intestine
41	chr15:31242600-31247400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:31242600-31253200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:31242600-31253800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:31243000-31254400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr15:31243200-31247200	Strong transcription	Primary T cells from cord blood	blood
46	chr15:31243200-31254800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:31243200-31267600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:31243400-31253000	Weak transcription	Fetal Brain Male	brain
49	chr15:31243600-31248400	Weak transcription	Stomach Mucosa	stomach
50	chr15:31243600-31248800	Strong transcription	Primary T killer memory cells from peripheral blood	blood

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