Variant report

Variant	rs11852862
Chromosome Location	chr15:78269731-78269732
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11072704	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11631951	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28625379	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243072	0.85[AMR][1000 genomes]
rs4509985	0.82[AMR][1000 genomes]
rs4514641	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4886551	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78258800-78275200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:78266200-78272400	Enhancers	Placenta	Placenta
3	chr15:78266400-78271800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:78267200-78270000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:78268000-78276000	Weak transcription	HSMMtube	muscle
6	chr15:78268000-78276200	Weak transcription	HSMM	muscle
7	chr15:78268200-78270400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr15:78268200-78270600	Weak transcription	Hela-S3	cervix
9	chr15:78268200-78271000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:78268200-78271400	Weak transcription	Spleen	Spleen
11	chr15:78268400-78276000	Weak transcription	Ovary	ovary
12	chr15:78268400-78276000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:78268400-78281800	Weak transcription	Right Atrium	heart
14	chr15:78268600-78275800	Weak transcription	Fetal Lung	lung
15	chr15:78268800-78271600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:78269400-78271000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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