Variant report

Variant	rs11853201
Chromosome Location	chr15:72395976-72395977
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72394985..72397263-chr15:72398518..72401032,2	MCF-7	breast:
2	chr15:72394930..72397507-chr15:72409085..72411660,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166192	Chromatin interaction
ENSG00000066933	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11853994	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11858354	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17741884	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17813866	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34539253	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35103604	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36114006	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71395064	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8192399	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8192402	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs989328	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	nsv869747	chr15:72372245-72403103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
10	nsv510665	chr15:72374862-72407548	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv511557	chr15:72386175-72408069	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv569929	chr15:72386349-72403001	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72367200-72407600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:72372200-72399400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:72375000-72408200	Weak transcription	Primary B cells from cord blood	blood
4	chr15:72377800-72397600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:72379000-72407800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:72379800-72406200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:72380000-72407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:72388400-72396200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr15:72389400-72396400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:72389600-72403600	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:72389800-72396200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:72390400-72407600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:72391200-72404200	Weak transcription	HSMMtube	muscle
14	chr15:72391800-72401600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:72391800-72406600	Weak transcription	Ovary	ovary
16	chr15:72392600-72403000	Weak transcription	Fetal Intestine Small	intestine
17	chr15:72392600-72404000	Weak transcription	Fetal Stomach	stomach
18	chr15:72395000-72396000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:72395000-72396600	Enhancers	Brain Cingulate Gyrus	brain
20	chr15:72395000-72396800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:72395000-72397800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:72395000-72397800	Enhancers	Brain Angular Gyrus	brain
23	chr15:72395000-72397800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr15:72395200-72396200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
25	chr15:72395200-72399400	Weak transcription	Fetal Heart	heart
26	chr15:72395400-72396000	Enhancers	Left Ventricle	heart
27	chr15:72395400-72396000	Enhancers	Psoas Muscle	Psoas
28	chr15:72395400-72396200	Weak transcription	A549	lung
29	chr15:72395400-72396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:72395600-72396000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:72395600-72396000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:72395600-72396000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:72395600-72396000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:72395600-72396000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:72395600-72396000	Enhancers	Lung	lung
36	chr15:72395600-72396000	Enhancers	Pancreas	Pancrea
37	chr15:72395600-72396000	Enhancers	Right Atrium	heart
38	chr15:72395600-72396000	Enhancers	Osteobl	bone
39	chr15:72395600-72396200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:72395600-72396400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:72395600-72396400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:72395600-72396400	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr15:72395600-72396400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:72395600-72396400	Enhancers	Brain Anterior Caudate	brain
45	chr15:72395600-72396400	Enhancers	Right Ventricle	heart
46	chr15:72395600-72396600	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr15:72395600-72396600	Enhancers	Adipose Nuclei	Adipose
48	chr15:72395600-72396600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr15:72395600-72397200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:72395600-72397200	Enhancers	Fetal Lung	lung

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