Variant report

Variant	rs11853244
Chromosome Location	chr15:99949518-99949519
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:99947884..99951610-chr15:100057572..100060447,3	MCF-7	breast:
2	chr15:99942024..99944742-chr15:99948131..99949840,2	MCF-7	breast:
3	chr15:99949028..99949626-chr15:100295696..100296496,2	MCF-7	breast:
4	chr15:99949149..99950707-chr15:99953216..99956210,2	MCF-7	breast:
5	chr15:99948631..99950805-chr15:100153730..100155690,2	MCF-7	breast:
6	chr15:99949082..99949796-chr15:99965826..99966399,2	MCF-7	breast:
7	chr15:99949026..99949881-chr15:100243908..100245125,7	MCF-7	breast:
8	chr15:99947710..99950479-chr15:99955909..99957738,2	MCF-7	breast:
9	chr15:99949443..99953317-chr15:100104194..100106896,3	MCF-7	breast:
10	chr15:99948993..99949864-chr15:100244211..100245261,3	MCF-7	breast:
11	chr15:99948929..99949922-chr15:100044731..100045793,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11852593	0.92[ASN][1000 genomes]
rs11852652	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11852814	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11855683	1.00[EUR][1000 genomes]
rs11856952	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8038258	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv904547	chr15:99940221-99979159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv904548	chr15:99940221-99979418	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv904549	chr15:99940221-99991506	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99944800-99972400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:99945000-99954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:99947400-99949600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:99947400-99949600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:99947400-99949600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:99947400-99949600	Enhancers	Ovary	ovary
7	chr15:99947400-99949800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:99947400-99951200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:99947600-99949600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:99947600-99949600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr15:99947600-99949600	Enhancers	Brain Angular Gyrus	brain
12	chr15:99947600-99949600	Enhancers	Brain Cingulate Gyrus	brain
13	chr15:99947600-99949600	Enhancers	HepG2	liver
14	chr15:99947800-99949600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr15:99947800-99949600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:99947800-99949600	Enhancers	Brain Germinal Matrix	brain
17	chr15:99947800-99949600	Enhancers	Fetal Heart	heart
18	chr15:99947800-99949600	Enhancers	Fetal Thymus	thymus
19	chr15:99947800-99950000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:99948000-99949600	Enhancers	Brain Anterior Caudate	brain
21	chr15:99948000-99949600	Enhancers	Fetal Lung	lung
22	chr15:99948000-99949800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:99948000-99950000	Enhancers	Placenta	Placenta
24	chr15:99948000-99950000	Enhancers	Right Ventricle	heart
25	chr15:99948000-99950200	Enhancers	Fetal Muscle Leg	muscle
26	chr15:99948000-99950200	Enhancers	Left Ventricle	heart
27	chr15:99948000-99951000	Enhancers	Fetal Stomach	stomach
28	chr15:99948200-99949600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr15:99948200-99949600	Enhancers	NH-A	brain
30	chr15:99948200-99950000	Enhancers	Brain Hippocampus Middle	brain
31	chr15:99948200-99950000	Enhancers	Esophagus	oesophagus
32	chr15:99948200-99950200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:99948200-99950200	Enhancers	Colon Smooth Muscle	Colon
34	chr15:99948200-99951000	Enhancers	Fetal Muscle Trunk	muscle
35	chr15:99948200-99951000	Enhancers	Right Atrium	heart
36	chr15:99948200-99951000	Enhancers	HSMMtube	muscle
37	chr15:99948400-99949600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr15:99948400-99949600	Enhancers	Stomach Mucosa	stomach
39	chr15:99948400-99949800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr15:99948400-99950000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:99948400-99950200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:99948600-99949600	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr15:99948600-99949600	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr15:99948600-99949600	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr15:99948600-99949800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr15:99948600-99950200	Enhancers	Brain Substantia Nigra	brain
47	chr15:99948600-99950800	Weak transcription	Thymus	Thymus
48	chr15:99948800-99949600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:99948800-99949600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr15:99948800-99949600	Flanking Active TSS	NHDF-Ad	bronchial

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