Variant report

Variant	rs11853867
Chromosome Location	chr15:73867840-73867841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73860979..73863153-chr15:73866416..73867980,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11853221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11857070	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73847600-73882400	Strong transcription	Placenta	Placenta
3	chr15:73848600-73868600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:73848600-73868600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:73848800-73884800	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:73848800-73885000	Strong transcription	Primary B cells from cord blood	blood
7	chr15:73850000-73868600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:73850200-73884400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:73850400-73870800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr15:73852200-73874600	Weak transcription	Fetal Heart	heart
11	chr15:73853400-73869000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:73853800-73868600	Strong transcription	Primary T cells from cord blood	blood
13	chr15:73855400-73869200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:73855800-73868200	Weak transcription	Psoas Muscle	Psoas
15	chr15:73855800-73872400	Strong transcription	Fetal Stomach	stomach
16	chr15:73856400-73878000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:73857200-73868600	Strong transcription	A549	lung
18	chr15:73857400-73868000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:73857400-73877200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:73857400-73884800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:73857600-73868400	Weak transcription	Right Atrium	heart
22	chr15:73857600-73878000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:73857600-73885000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:73857800-73875600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:73858000-73868600	Strong transcription	Osteobl	bone
26	chr15:73858000-73870800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:73858000-73884800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:73858200-73885800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr15:73859000-73868800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:73859200-73868600	Strong transcription	NHDF-Ad	bronchial
31	chr15:73859400-73870800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:73859400-73882000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:73859800-73868600	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr15:73859800-73869000	Strong transcription	Primary hematopoietic stem cells	blood
35	chr15:73860200-73871200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr15:73860400-73868600	Strong transcription	HepG2	liver
37	chr15:73860600-73868600	Strong transcription	Brain Germinal Matrix	brain
38	chr15:73860600-73885000	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:73862000-73872200	Genic enhancers	Fetal Intestine Large	intestine
40	chr15:73862200-73884800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr15:73863000-73870200	Weak transcription	K562	blood
42	chr15:73863000-73874800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr15:73863200-73873200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr15:73863200-73889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:73863400-73875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:73863800-73882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr15:73864800-73875200	Weak transcription	Fetal Brain Male	brain
48	chr15:73865400-73869600	Weak transcription	HSMM	muscle
49	chr15:73865800-73868600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:73865800-73868600	Genic enhancers	Stomach Smooth Muscle	stomach

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