Variant report

Variant	rs11854764
Chromosome Location	chr15:56760654-56760655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr15:56760326-56761120	K562	blood:	n/a	chr15:56760914-56760925 chr15:56760916-56760930 chr15:56760915-56760929 chr15:56760912-56760926 chr15:56760912-56760929 chr15:56760910-56760927 chr15:56760742-56760758 chr15:56760915-56760927 chr15:56760915-56760928 chr15:56760916-56760926 chr15:56760914-56760928 chr15:56760914-56760934 chr15:56760910-56760931 chr15:56760915-56760927 chr15:56760915-56760926

Variant related genes	Relation type
MNS1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11856746	0.95[CEU][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910542	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12913413	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12914206	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34884411	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34940191	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66686937	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1046891	chr15:56659587-56792033	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv498847	chr15:56667038-56896395	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2525559	chr15:56669294-56897412	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv433294	chr15:56676457-56853535	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3693203	chr15:56676457-56894478	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv35150	chr15:56677730-56896304	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757602	chr15:56736478-56790080	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2760033	chr15:56736478-56790080	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56757800-56761600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56757800-56761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:56757800-56761600	Weak transcription	Fetal Intestine Large	intestine
4	chr15:56757800-56761600	Weak transcription	Fetal Intestine Small	intestine
5	chr15:56757800-56761600	Weak transcription	Placenta	Placenta
6	chr15:56757800-56761600	Weak transcription	Pancreas	Pancrea
7	chr15:56757800-56761600	Weak transcription	K562	blood
8	chr15:56758000-56761600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:56758400-56761600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:56760000-56761000	Active TSS	Fetal Kidney	kidney
11	chr15:56760200-56760800	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr15:56760200-56760800	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr15:56760200-56761200	Active TSS	NHDF-Ad	bronchial
14	chr15:56760200-56761400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:56760200-56761400	Flanking Active TSS	Dnd41	blood
16	chr15:56760400-56760800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr15:56760400-56760800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr15:56760400-56760800	Flanking Active TSS	GM12878-XiMat	blood
19	chr15:56760400-56760800	Active TSS	HMEC	breast
20	chr15:56760400-56761000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr15:56760400-56761000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:56760400-56761000	Enhancers	Stomach Mucosa	stomach
23	chr15:56760400-56761000	Active TSS	Thymus	Thymus
24	chr15:56760400-56761000	Active TSS	HepG2	liver
25	chr15:56760400-56761000	Active TSS	NHLF	lung
26	chr15:56760400-56761200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:56760400-56761200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:56760400-56761200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:56760400-56761200	Bivalent/Poised TSS	HUVEC	blood vessel
30	chr15:56760400-56761400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:56760400-56761800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr15:56760600-56760800	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr15:56760600-56760800	Active TSS	Primary T cells from cord blood	blood
34	chr15:56760600-56760800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:56760600-56760800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:56760600-56760800	Active TSS	Monocytes-CD14+_RO01746	blood
37	chr15:56760600-56761000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:56760600-56761000	Active TSS	Primary monocytes fromperipheralblood	blood
39	chr15:56760600-56761000	Active TSS	Primary B cells from peripheral blood	blood
40	chr15:56760600-56761000	Active TSS	Primary T cells fromperipheralblood	blood
41	chr15:56760600-56761000	Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr15:56760600-56761000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:56760600-56761000	Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr15:56760600-56761000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr15:56760600-56761000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:56760600-56761000	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr15:56760600-56761000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:56760600-56761000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:56760600-56761000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:56760600-56761000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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