Variant report

Variant	rs11855087
Chromosome Location	chr15:75841018-75841019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75835718..75837782-chr15:75838863..75841785,2	K562	blood:
2	chr15:75840878..75843615-chr15:75844264..75846206,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10851882	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11072544	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11072552	0.96[CEU][hapmap]
rs1128933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11632105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs11632813	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs11634402	0.96[CEU][hapmap]
rs11636199	0.83[CHB][hapmap]
rs11638974	0.83[CHB][hapmap]
rs12101874	0.88[CEU][hapmap]
rs12324230	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs12708520	0.83[CHB][hapmap]
rs13380103	0.83[CHB][hapmap]
rs28693593	0.83[CHB][hapmap]
rs3809549	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs4075522	0.83[CHB][hapmap]
rs4430707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4451914	0.83[CHB][hapmap]
rs4462560	0.83[CHB][hapmap]
rs4526985	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs4564532	0.83[CHB][hapmap]
rs4886446	0.81[CHB][hapmap]
rs4886452	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs4886699	0.83[CHB][hapmap]
rs4886702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs4886703	0.83[CHB][hapmap]
rs4886704	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4886705	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4886706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4886708	0.83[CHB][hapmap]
rs4886718	0.96[CEU][hapmap]
rs6495174	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6495176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6495181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7164541	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs7166737	0.83[CHB][hapmap]
rs7175852	0.82[CHB][hapmap]
rs7182283	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs8026113	0.88[CEU][hapmap]
rs8028277	0.83[CHB][hapmap]
rs8034317	0.83[CHB][hapmap]
rs9806241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv819520	chr15:75819453-75865881	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75817800-75843200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:75819600-75865000	Weak transcription	Primary B cells from cord blood	blood
3	chr15:75819600-75866200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:75819600-75869200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:75819800-75860800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:75819800-75869600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:75820000-75844000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:75823800-75858000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:75823800-75869600	Weak transcription	Fetal Thymus	thymus
10	chr15:75824600-75869800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:75825400-75849800	Weak transcription	Brain Anterior Caudate	brain
12	chr15:75825400-75857800	Weak transcription	NH-A	brain
13	chr15:75825600-75859400	Weak transcription	Fetal Stomach	stomach
14	chr15:75826000-75843800	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:75826000-75857800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:75826400-75853800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:75826400-75865600	Weak transcription	HUVEC	blood vessel
18	chr15:75826600-75860400	Weak transcription	Hela-S3	cervix
19	chr15:75826600-75865200	Weak transcription	NHEK	skin
20	chr15:75826800-75843400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:75829200-75862600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:75831000-75864800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:75831200-75842000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:75831400-75847000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:75833200-75865000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:75833200-75865400	Weak transcription	HMEC	breast
27	chr15:75835000-75844800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:75835200-75847000	Weak transcription	HSMMtube	muscle
29	chr15:75835200-75854400	Weak transcription	HSMM	muscle
30	chr15:75835200-75865400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:75835200-75866200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:75835800-75843000	Weak transcription	Placenta	Placenta
33	chr15:75835800-75844800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:75835800-75846800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:75835800-75846800	Weak transcription	Osteobl	bone
36	chr15:75835800-75865000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:75836000-75844800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:75836200-75843200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr15:75836400-75846800	Weak transcription	Brain Angular Gyrus	brain
40	chr15:75836400-75847200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:75836800-75843600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:75836800-75845200	Weak transcription	Liver	Liver
43	chr15:75836800-75862200	Weak transcription	Primary T cells from cord blood	blood
44	chr15:75837000-75841600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:75837000-75843200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr15:75837000-75852400	Weak transcription	HepG2	liver
47	chr15:75837000-75869600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:75837200-75843800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:75837200-75847200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:75837400-75845000	Weak transcription	Duodenum Mucosa	Duodenum

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