Variant report

Variant	rs11855265
Chromosome Location	chr15:29964119-29964120
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:29961869-29964392	A549	lung:	n/a	chr15:29962201-29962210
2	TAF1	chr15:29962832-29964269	A549	lung:	n/a	n/a
3	NR3C1	chr15:29962997-29964140	A549	lung:	n/a	chr15:29963822-29963829
4	POLR2A	chr15:29962857-29964406	U87	brain:	n/a	n/a
5	ATF3	chr15:29963014-29964208	A549	lung:	n/a	n/a
6	SP1	chr15:29962473-29964370	A549	lung:	n/a	n/a
7	NR3C1	chr15:29962962-29964272	A549	lung:	n/a	chr15:29963822-29963829
8	TCF12	chr15:29961833-29965059	A549	lung:	n/a	chr15:29964134-29964141
9	ETS1	chr15:29962873-29964201	A549	lung:	n/a	n/a
10	EP300	chr15:29962716-29964410	A549	lung:	n/a	chr15:29963838-29963848
11	TCF12	chr15:29963111-29964230	ECC-1	luminal epithelium:	n/a	chr15:29964134-29964141
12	SIX5	chr15:29962680-29964187	A549	lung:	n/a	n/a
13	NFIC	chr15:29962863-29964218	SK-N-SH	brain:	n/a	n/a
14	USF1	chr15:29963787-29964157	A549	lung:	n/a	n/a
15	NFIC	chr15:29963027-29964139	ECC-1	luminal epithelium:	n/a	n/a
16	GATA3	chr15:29962999-29964216	SK-N-SH	brain:	n/a	n/a
17	BCL3	chr15:29962802-29964253	A549	lung:	n/a	n/a
18	TCF12	chr15:29963649-29964243	ECC-1	luminal epithelium:	n/a	chr15:29964134-29964141
19	TCF12	chr15:29962918-29964247	SK-N-SH	brain:	n/a	chr15:29964134-29964141
20	YY1	chr15:29963716-29964434	A549	lung:	n/a	n/a
21	POLR2A	chr15:29963932-29964188	A549	lung:	n/a	n/a
22	MYC	chr15:29961465-29964218	A549	lung:	n/a	chr15:29962201-29962210
23	CEBPB	chr15:29962930-29964280	A549	lung:	n/a	n/a
24	POLR2A	chr15:29963948-29964180	A549	lung:	n/a	n/a
25	PBX3	chr15:29962999-29964181	A549	lung:	n/a	n/a
26	NR3C1	chr15:29962990-29964199	A549	lung:	n/a	chr15:29963822-29963829
27	EP300	chr15:29962881-29964269	SK-N-SH	brain:	n/a	chr15:29963838-29963848
28	FOXM1	chr15:29963504-29964197	ECC-1	luminal epithelium:	n/a	n/a
29	PBX3	chr15:29963023-29964153	SK-N-SH	brain:	n/a	n/a
30	POLR2A	chr15:29963929-29964222	A549	lung:	n/a	n/a
31	MAX	chr15:29961801-29964819	A549	lung:	n/a	chr15:29962201-29962210
32	EP300	chr15:29962850-29964314	A549	lung:	n/a	chr15:29963838-29963848
33	FOXA2	chr15:29962983-29964391	A549	lung:	n/a	chr15:29963835-29963847
34	JUND	chr15:29962999-29964280	A549	lung:	n/a	chr15:29963287-29963298
35	JUND	chr15:29963056-29964333	A549	lung:	n/a	chr15:29963287-29963298
36	FOSL2	chr15:29961927-29964352	A549	lung:	n/a	chr15:29962200-29962212 chr15:29962195-29962207 chr15:29962202-29962210 chr15:29962616-29962627 chr15:29962620-29962628
37	NFIC	chr15:29962975-29964311	ECC-1	luminal epithelium:	n/a	n/a
38	USF1	chr15:29962972-29964274	A549	lung:	n/a	n/a
39	PBX3	chr15:29962882-29964124	SK-N-SH	brain:	n/a	n/a
40	E2F6	chr15:29962046-29964395	A549	lung:	n/a	n/a
41	SIN3AK20	chr15:29962868-29964214	A549	lung:	n/a	n/a
42	POLR2A	chr15:29963927-29964193	A549	lung:	n/a	n/a
43	TEAD4	chr15:29963047-29964226	A549	lung:	n/a	n/a
44	GATA3	chr15:29961866-29964389	A549	lung:	n/a	n/a
45	TCF12	chr15:29963008-29964314	SK-N-SH	brain:	n/a	chr15:29964134-29964141
46	SP1	chr15:29962686-29964488	A549	lung:	n/a	n/a
47	FOXA2	chr15:29962911-29964419	A549	lung:	n/a	chr15:29963835-29963847
48	SIN3AK20	chr15:29962916-29964223	A549	lung:	n/a	n/a
49	REST	chr15:29962958-29964125	A549	lung:	n/a	n/a
50	POLR2A	chr15:29962994-29964211	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:29962655..29964571-chr15:29977742..29979796,2	MCF-7	breast:
2	chr15:29962258..29965164-chr15:29975337..29978294,2	K562	blood:
3	chr15:29963308..29966325-chr15:29969891..29973216,3	K562	blood:

Variant related genes	Relation type
ENSG00000256802	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11855826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57715084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29957200-29966600	Weak transcription	Right Atrium	heart
2	chr15:29958000-29964600	Weak transcription	Fetal Lung	lung
3	chr15:29958000-29966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:29960000-29966000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:29961800-29964200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:29961800-29964200	Enhancers	HSMMtube	muscle
7	chr15:29961800-29964200	Enhancers	NHDF-Ad	bronchial
8	chr15:29961800-29964600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:29961800-29965000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:29961800-29966000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:29962000-29964200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:29962000-29964200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:29962000-29964200	Enhancers	Pancreas	Pancrea
14	chr15:29962000-29964200	Enhancers	NHLF	lung
15	chr15:29962000-29964400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:29962000-29964800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:29962000-29965000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:29962200-29964200	Enhancers	HMEC	breast
19	chr15:29962200-29967200	Enhancers	Stomach Mucosa	stomach
20	chr15:29962400-29964200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:29962400-29964400	Enhancers	Colonic Mucosa	Colon
22	chr15:29962400-29964800	Weak transcription	K562	blood
23	chr15:29962800-29964200	Enhancers	Fetal Kidney	kidney
24	chr15:29963000-29964400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr15:29963200-29964200	Enhancers	Brain Hippocampus Middle	brain
26	chr15:29963200-29964200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:29963200-29964200	Flanking Active TSS	Fetal Intestine Large	intestine
28	chr15:29963400-29964200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr15:29963400-29964200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr15:29963400-29964200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:29963400-29964200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:29963400-29964200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr15:29963400-29964200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:29963400-29964200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr15:29963400-29964200	Enhancers	Brain Anterior Caudate	brain
36	chr15:29963400-29964200	Flanking Active TSS	HSMM	muscle
37	chr15:29963400-29967000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:29963600-29964200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:29963600-29964200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr15:29963600-29964200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr15:29963600-29964200	Enhancers	Stomach Smooth Muscle	stomach
42	chr15:29963600-29965600	Weak transcription	HUVEC	blood vessel
43	chr15:29963800-29964200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:29963800-29964200	Active TSS	Duodenum Mucosa	Duodenum
45	chr15:29963800-29964200	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr15:29963800-29964400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:29963800-29964400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:29963800-29964400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:29963800-29965000	Enhancers	Hela-S3	cervix
50	chr15:29963800-29965200	Enhancers	Fetal Intestine Small	intestine

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