Variant report

Variant	rs11855641
Chromosome Location	chr15:41088017-41088018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41086302..41089944-chr15:41090319..41093510,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11070290	0.82[EUR][1000 genomes]
rs11070294	0.80[EUR][1000 genomes]
rs12898552	0.81[EUR][1000 genomes]
rs2010300	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289219	0.91[EUR][1000 genomes]
rs2304583	0.82[EUR][1000 genomes]
rs2899000	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621344	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34988257	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3759796	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56886112	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57818172	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57825040	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57943888	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62018584	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11855641	C15orf57	cis	lung	GTEx
rs11855641	C15orf57	cis	Esophagus Muscularis	GTEx
rs11855641	C15orf57	cis	Artery Tibial	GTEx
rs11855641	ZFYVE19	Cis_1M	lymphoblastoid	RTeQTL
rs11855641	RP11-111A22.1	cis	Artery Tibial	GTEx
rs11855641	C15orf57	cis	Adipose Subcutaneous	GTEx
rs11855641	CCDC32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41072400-41090200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:41072600-41098600	Weak transcription	Fetal Brain Female	brain
3	chr15:41072600-41098600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:41078200-41098600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:41079600-41098800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:41080000-41089200	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:41080000-41090400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:41080000-41094600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:41080000-41099000	Weak transcription	Aorta	Aorta
10	chr15:41080400-41093000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:41080400-41098200	Weak transcription	GM12878-XiMat	blood
12	chr15:41080400-41098600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:41080400-41098800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:41080400-41098800	Weak transcription	Brain Anterior Caudate	brain
15	chr15:41080600-41098200	Weak transcription	Fetal Thymus	thymus
16	chr15:41080600-41098600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:41080600-41098600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr15:41080600-41098600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:41081400-41088400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:41081400-41098200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:41081800-41090600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:41081800-41094600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:41081800-41094600	Weak transcription	Ovary	ovary
24	chr15:41082000-41095000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:41082000-41096000	Weak transcription	Dnd41	blood
26	chr15:41082000-41098600	Weak transcription	Fetal Lung	lung
27	chr15:41082000-41098800	Weak transcription	Fetal Kidney	kidney
28	chr15:41082400-41088200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:41082400-41090600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:41082600-41088400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:41082600-41089000	Enhancers	Stomach Mucosa	stomach
32	chr15:41082800-41088200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:41083000-41088200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:41083200-41093400	Weak transcription	Thymus	Thymus
35	chr15:41084400-41098200	Weak transcription	Brain Germinal Matrix	brain
36	chr15:41084800-41089400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr15:41084800-41090400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:41084800-41095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:41084800-41098200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr15:41085000-41094800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:41085200-41090400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:41085200-41095400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:41085400-41090800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:41085600-41093200	Weak transcription	Placenta	Placenta
45	chr15:41085800-41095400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:41086000-41088200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr15:41086000-41088400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:41086000-41090600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr15:41086000-41090800	Weak transcription	Fetal Stomach	stomach
50	chr15:41086000-41093200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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