Variant report

Variant	rs11855860
Chromosome Location	chr15:41823593-41823594
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41823588-41823594	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr15:41823335-41823636	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41813214..41815867-chr15:41821195..41823790,3	K562	blood:
2	chr15:41819746..41824231-chr15:41825451..41829235,5	K562	blood:
3	chr15:41813214..41815755-chr15:41821195..41823682,2	K562	blood:
4	chr15:41791755..41794361-chr15:41822033..41824334,2	K562	blood:

Variant related genes	Relation type
RPAP1	TF binding region
ENSG00000103932	Chromatin interaction
ENSG00000137825	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11070334	0.85[ASN][1000 genomes]
rs11853341	0.81[ASN][1000 genomes]
rs2297380	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904112	chr15:41806658-41836234	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41806400-41835200	Weak transcription	Right Atrium	heart
2	chr15:41806600-41824600	Weak transcription	Fetal Kidney	kidney
3	chr15:41806600-41835200	Weak transcription	Fetal Heart	heart
4	chr15:41807200-41835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:41808000-41829600	Strong transcription	Fetal Stomach	stomach
6	chr15:41808600-41829200	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:41808600-41829600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:41808600-41835400	Weak transcription	Fetal Brain Male	brain
9	chr15:41808800-41829600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:41809000-41829400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:41809000-41829400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:41809600-41829200	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:41809600-41829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:41811600-41829600	Strong transcription	Fetal Intestine Large	intestine
15	chr15:41811600-41829800	Strong transcription	Fetal Muscle Leg	muscle
16	chr15:41811800-41829400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:41811800-41829400	Strong transcription	Brain Hippocampus Middle	brain
18	chr15:41811800-41829400	Strong transcription	Stomach Smooth Muscle	stomach
19	chr15:41811800-41829600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:41811800-41829600	Strong transcription	Brain Anterior Caudate	brain
21	chr15:41812000-41829600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:41812200-41828800	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr15:41812200-41829200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:41812200-41829600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:41812200-41829600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:41812400-41823600	Strong transcription	Gastric	stomach
27	chr15:41812400-41823800	Strong transcription	Fetal Brain Female	brain
28	chr15:41812400-41829200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:41812400-41829400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr15:41812400-41829400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:41812400-41829400	Strong transcription	Liver	Liver
32	chr15:41812400-41829400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:41812400-41829400	Strong transcription	Fetal Intestine Small	intestine
34	chr15:41812400-41829400	Strong transcription	Left Ventricle	heart
35	chr15:41812400-41829600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:41812600-41829400	Strong transcription	Brain Germinal Matrix	brain
37	chr15:41812600-41829400	Strong transcription	Pancreas	Pancrea
38	chr15:41812600-41829600	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr15:41812800-41828800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:41813000-41829600	Strong transcription	Primary T cells from cord blood	blood
41	chr15:41814400-41829600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr15:41815000-41829400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:41815400-41829000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr15:41815600-41825400	Strong transcription	Rectal Smooth Muscle	rectum
45	chr15:41815800-41825600	Strong transcription	Colonic Mucosa	Colon
46	chr15:41815800-41829200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:41815800-41829400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:41816000-41823800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:41816200-41823600	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr15:41816200-41829600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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