Variant report

Variant	rs11856550
Chromosome Location	chr15:41954728-41954729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41952932..41955703-chr15:42081114..42083481,2	K562	blood:
2	chr15:41847317..41853712-chr15:41951201..41955578,8	K562	blood:
3	chr15:41953663..41957556-chr15:41966682..41969969,3	K562	blood:
4	chr15:41954100..41955680-chr15:41982898..41984506,2	MCF-7	breast:
5	chr15:41785992..41788311-chr15:41953669..41955278,2	MCF-7	breast:
6	chr15:41624254..41626833-chr15:41952098..41954867,2	K562	blood:
7	chr15:41853373..41858542-chr15:41950830..41955637,10	K562	blood:
8	chr15:41953002..41954735-chr15:41971952..41974245,2	MCF-7	breast:
9	chr15:41952704..41955677-chr15:42269856..42272362,2	K562	blood:
10	chr15:41954590..41956853-chr15:41972603..41974738,2	K562	blood:
11	chr15:41954547..41956323-chr15:41964116..41966547,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104147	Chromatin interaction
ENSG00000137825	Chromatin interaction
ENSG00000137804	Chromatin interaction
ENSG00000207766	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000259838	Chromatin interaction

rs_ID	r²[population]
rs2008558	1.00[AFR][1000 genomes]
rs316612	1.00[AFR][1000 genomes]
rs4923918	1.00[AFR][1000 genomes]
rs55757140	1.00[AFR][1000 genomes]
rs8038148	0.92[AMR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41951800-41954800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:41951800-41955400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:41952000-41954800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:41952000-41954800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:41952000-41954800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr15:41952000-41954800	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr15:41952000-41954800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr15:41952000-41954800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr15:41952000-41954800	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr15:41952000-41954800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr15:41952000-41954800	Flanking Active TSS	NH-A	brain
12	chr15:41952000-41955000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:41952000-41955400	Flanking Active TSS	Dnd41	blood
14	chr15:41952200-41954800	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr15:41952200-41955000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr15:41952200-41955000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:41952600-41954800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr15:41952600-41954800	Active TSS	A549	lung
19	chr15:41953000-41954800	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr15:41953000-41954800	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr15:41953200-41954800	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr15:41953200-41954800	Flanking Active TSS	Fetal Lung	lung
23	chr15:41953200-41955200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:41953600-41954800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:41953600-41954800	Flanking Active TSS	NHDF-Ad	bronchial
26	chr15:41953800-41954800	Active TSS	H1 Cell Line	embryonic stem cell
27	chr15:41953800-41954800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr15:41953800-41954800	Active TSS	Psoas Muscle	Psoas
29	chr15:41953800-41955000	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr15:41954000-41955000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:41954000-41955800	Active TSS	K562	blood
32	chr15:41954200-41954800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:41954200-41954800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:41954200-41954800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr15:41954200-41954800	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr15:41954200-41954800	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr15:41954200-41954800	Flanking Active TSS	Hela-S3	cervix
38	chr15:41954200-41954800	Flanking Active TSS	HepG2	liver
39	chr15:41954200-41962600	Weak transcription	Spleen	Spleen
40	chr15:41954400-41954800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr15:41954400-41954800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr15:41954400-41954800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:41954400-41954800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:41954400-41954800	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr15:41954400-41954800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr15:41954400-41954800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr15:41954400-41954800	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr15:41954400-41954800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr15:41954400-41954800	Flanking Active TSS	Fetal Brain Female	brain
50	chr15:41954400-41954800	Flanking Active TSS	Fetal Kidney	kidney

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