Variant report

Variant	rs11857173
Chromosome Location	chr15:50551360-50551361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10518836	0.92[ASN][1000 genomes]
rs11856059	0.87[EUR][1000 genomes]
rs17740607	0.88[ASN][1000 genomes]
rs17796788	0.92[ASN][1000 genomes]
rs72737093	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50548000-50551800	Enhancers	K562	blood
2	chr15:50548000-50555600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr15:50548200-50552800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:50548200-50555800	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:50548400-50551800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:50548400-50553200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:50549200-50552600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:50549800-50554200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:50549800-50554600	Weak transcription	Spleen	Spleen
10	chr15:50550000-50552600	Weak transcription	HSMMtube	muscle
11	chr15:50550200-50555600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:50550400-50552800	Weak transcription	HSMM	muscle
13	chr15:50550800-50554000	Enhancers	Hela-S3	cervix
14	chr15:50550800-50556000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:50551200-50551600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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