Variant report

Variant	rs11857230
Chromosome Location	chr15:50392821-50392822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10519257	0.86[JPT][hapmap]
rs10519259	0.82[JPT][hapmap]
rs11070745	0.91[ASN][1000 genomes]
rs11070747	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11070748	0.98[ASN][1000 genomes]
rs11638799	0.81[JPT][hapmap]
rs11638841	0.84[JPT][hapmap]
rs12050709	0.91[JPT][hapmap]
rs12148444	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12441604	1.00[ASN][1000 genomes]
rs12442280	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12902530	0.86[ASN][1000 genomes]
rs12915042	0.82[JPT][hapmap]
rs2414016	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414018	0.87[JPT][hapmap]
rs28369108	0.86[ASN][1000 genomes]
rs41362650	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4143837	0.91[JPT][hapmap]
rs4775849	0.90[ASN][1000 genomes]
rs4775851	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7168944	0.85[JPT][hapmap]
rs7170781	0.87[JPT][hapmap]
rs7170947	0.86[JPT][hapmap]
rs7172615	0.91[JPT][hapmap]
rs7172916	0.86[JPT][hapmap]
rs7177318	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7178944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179392	0.90[ASN][1000 genomes]
rs8040030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8040357	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50388200-50393600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr15:50390000-50393600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:50390800-50393000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:50391200-50393200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:50391200-50393600	Enhancers	NHDF-Ad	bronchial
6	chr15:50391800-50394000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:50391800-50397800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:50392400-50399400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr15:50392800-50393000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:50392800-50393000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr15:50392800-50394600	Strong transcription	Primary hematopoietic stem cells	blood

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