Variant report

Variant	rs11857376
Chromosome Location	chr15:75052927-75052928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75052835..75054344-chr15:75136259..75138062,2	K562	blood:
2	chr15:75041437..75045142-chr15:75051536..75054125,3	K562	blood:
3	chr15:74675629..74677365-chr15:75051109..75053785,2	K562	blood:
4	chr15:75052602..75054359-chr15:75126408..75128956,2	K562	blood:
5	chr15:75051203..75056019-chr15:75070917..75077277,10	K562	blood:
6	chr15:74985341..74988320-chr15:75052220..75054315,3	K562	blood:
7	chr15:74906445..74912146-chr15:75051101..75055740,8	K562	blood:
8	chr15:75052612..75054479-chr15:75056291..75058590,3	K562	blood:
9	chr15:75052551..75054172-chr15:75062525..75064196,2	K562	blood:
10	chr15:74941966..74943956-chr15:75052717..75054297,2	K562	blood:
11	chr15:74985945..74987944-chr15:75051240..75054406,3	K562	blood:
12	chr15:74894427..74896145-chr15:75051491..75054260,2	K562	blood:
13	chr15:75052595..75054880-chr15:75088120..75090016,2	K562	blood:
14	chr15:75025853..75028431-chr15:75051369..75053077,3	K562	blood:
15	chr15:74934635..74938878-chr15:75051211..75054308,5	K562	blood:
16	chr15:74912136..74916379-chr15:75051142..75054460,5	K562	blood:
17	chr15:75051704..75054183-chr15:75058091..75061237,4	K562	blood:
18	chr15:75051301..75054490-chr15:75071313..75075303,5	K562	blood:
19	chr15:74914657..74916194-chr15:75052609..75054460,2	K562	blood:
20	chr15:74968474..74971809-chr15:75051252..75053617,3	K562	blood:
21	chr15:75051545..75054051-chr15:75061447..75064196,2	K562	blood:
22	chr15:74928554..74932051-chr15:75050026..75053131,3	K562	blood:
23	chr15:74919586..74921239-chr15:75052587..75054254,2	K562	blood:
24	chr15:74923745..74927577-chr15:75051297..75054526,4	K562	blood:
25	chr15:74947623..74950435-chr15:75051596..75055005,3	K562	blood:
26	chr15:75001276..75003833-chr15:75051566..75054281,2	K562	blood:
27	chr15:74906445..74909695-chr15:75051594..75054870,4	K562	blood:
28	chr15:74903530..74906073-chr15:75051863..75054260,2	K562	blood:
29	chr15:75052007..75054133-chr15:75241107..75244703,3	K562	blood:
30	chr15:74923400..74930525-chr15:75051156..75055719,14	K562	blood:
31	chr15:75051136..75052999-chr15:75065266..75067915,2	K562	blood:
32	chr15:74919586..74921510-chr15:75052754..75054258,2	K562	blood:
33	chr15:74710597..74712982-chr15:75051460..75053643,2	K562	blood:
34	chr15:75052007..75053577-chr15:75242225..75244703,2	K562	blood:
35	chr15:74950726..74952917-chr15:75052617..75054121,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2470890	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11857376	SCAMP5	cis	Artery Tibial	GTEx
rs11857376	COX5A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
2	chr15:75045600-75053600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:75047200-75063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:75047400-75054000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:75049400-75054600	Weak transcription	Spleen	Spleen
6	chr15:75051200-75053000	Enhancers	HepG2	liver
7	chr15:75052600-75053200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:75052800-75053800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:75052800-75054000	Weak transcription	Placenta	Placenta

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