Variant report

Variant	rs11857438
Chromosome Location	chr15:58474906-58474907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58358505..58359071-chr15:58474691..58475417,2	K562	blood:
2	chr15:58474504..58475220-chr15:58513550..58514293,3	K562	blood:
3	chr15:58158208..58158931-chr15:58474638..58475367,2	MCF-7	breast:
4	chr15:58407591..58408456-chr15:58474477..58475204,2	MCF-7	breast:
5	chr15:58157203..58158392-chr15:58474458..58475600,4	K562	blood:
6	chr15:58369556..58370249-chr15:58474458..58475050,3	MCF-7	breast:
7	chr15:58369765..58370364-chr15:58474440..58475412,7	K562	blood:
8	chr15:58261336..58261843-chr15:58474684..58475338,2	K562	blood:
9	chr15:58473604..58477327-chr15:58478403..58482264,4	K562	blood:
10	chr15:58369515..58370275-chr15:58474521..58475420,3	MCF-7	breast:
11	chr15:58346910..58349954-chr15:58473390..58475572,3	K562	blood:
12	chr15:58335119..58336017-chr15:58474443..58475104,3	K562	blood:
13	chr15:58362749..58363649-chr15:58474448..58475386,2	MCF-7	breast:
14	chr15:58407522..58408442-chr15:58474456..58475377,4	K562	blood:
15	chr15:58158497..58159034-chr15:58474354..58475384,5	K562	blood:
16	chr15:58355812..58358960-chr15:58474345..58476655,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13329178	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711060	0.80[TSI][hapmap]
rs28495584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28568664	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742956	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7176545	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8035112	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8042354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:58458400-58477800	Strong transcription	Liver	Liver
3	chr15:58471600-58481200	Weak transcription	Right Atrium	heart
4	chr15:58472600-58475200	Enhancers	K562	blood
5	chr15:58473000-58476000	Weak transcription	NHEK	skin
6	chr15:58473000-58477600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:58473000-58478400	Weak transcription	Spleen	Spleen
8	chr15:58473200-58476000	Weak transcription	HMEC	breast
9	chr15:58473200-58476200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:58473800-58476200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:58474000-58476400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:58474600-58475000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:58474600-58475000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
14	chr15:58474800-58475000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr15:58474800-58475000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:58474800-58475200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr15:58474800-58476000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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