Variant report

Variant	rs11857596
Chromosome Location	chr15:38988924-38988925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf53-2	chr15:38988296-38989826	l_1145_chr15:38986242-38988846_testes

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17651741	1.00[YRI][hapmap]
rs28401662	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38978800-38990800	Weak transcription	Right Atrium	heart
2	chr15:38986600-38992600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr15:38986600-38992600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr15:38986800-38989200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:38986800-38992400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr15:38986800-38992600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:38987000-38992000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:38987200-38989200	Enhancers	GM12878-XiMat	blood
9	chr15:38987200-38989400	Enhancers	Fetal Heart	heart
10	chr15:38987200-38991800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:38987200-38992000	Enhancers	Primary hematopoietic stem cells	blood
12	chr15:38987200-38992400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:38987200-38992600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr15:38987800-38991400	Enhancers	Dnd41	blood
15	chr15:38987800-38991800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:38987800-38991800	Enhancers	Fetal Thymus	thymus
17	chr15:38988000-38989000	Enhancers	Placenta	Placenta
18	chr15:38988000-38989000	Enhancers	Thymus	Thymus
19	chr15:38988000-38989400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:38988000-38989400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:38988200-38989000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:38988200-38989000	Enhancers	Left Ventricle	heart
23	chr15:38988200-38989000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr15:38988200-38989000	Enhancers	HSMM	muscle
25	chr15:38988200-38989000	Enhancers	NH-A	brain
26	chr15:38988200-38989400	Enhancers	Primary T cells from cord blood	blood
27	chr15:38988200-38989400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:38988200-38990200	Enhancers	Duodenum Mucosa	Duodenum
29	chr15:38988400-38989000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:38988400-38989000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:38988400-38989000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:38988400-38989000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:38988400-38989000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr15:38988400-38989000	Enhancers	NHDF-Ad	bronchial
35	chr15:38988400-38989000	Enhancers	Osteobl	bone
36	chr15:38988400-38989400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:38988400-38992000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr15:38988600-38992400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:38988600-38994400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:38988800-38989200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:38988800-38989400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr15:38988800-38990400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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