Variant report

Variant	rs11858941
Chromosome Location	chr15:99948354-99948355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99947884..99951610-chr15:100057572..100060447,3	MCF-7	breast:
2	chr15:99941795..99944009-chr15:99945598..99948491,4	K562	blood:
3	chr15:99942024..99944742-chr15:99948131..99949840,2	MCF-7	breast:
4	chr15:99947710..99950479-chr15:99955909..99957738,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11854674	0.90[EUR][1000 genomes]
rs11854677	0.90[EUR][1000 genomes]
rs11855362	0.90[EUR][1000 genomes]
rs11857764	0.90[EUR][1000 genomes]
rs74033502	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74035703	0.90[EUR][1000 genomes]
rs74035704	0.90[EUR][1000 genomes]
rs74035706	0.90[EUR][1000 genomes]
rs74035708	0.90[EUR][1000 genomes]
rs74035709	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74035710	0.90[EUR][1000 genomes]
rs74035711	0.90[EUR][1000 genomes]
rs74035713	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74035715	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv904547	chr15:99940221-99979159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv904548	chr15:99940221-99979418	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv904549	chr15:99940221-99991506	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99940600-99948400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:99942800-99948400	Weak transcription	Stomach Mucosa	stomach
3	chr15:99943000-99948400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:99943600-99948400	Weak transcription	Lung	lung
5	chr15:99943600-99948600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:99943800-99948800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:99944200-99948400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:99944200-99948600	Weak transcription	Hela-S3	cervix
9	chr15:99944800-99972400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:99945000-99954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:99947400-99948400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:99947400-99948400	Enhancers	Dnd41	blood
13	chr15:99947400-99948600	Enhancers	Thymus	Thymus
14	chr15:99947400-99949400	Enhancers	Primary T cells from cord blood	blood
15	chr15:99947400-99949600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr15:99947400-99949600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr15:99947400-99949600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:99947400-99949600	Enhancers	Ovary	ovary
19	chr15:99947400-99949800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr15:99947400-99951200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:99947600-99948400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:99947600-99949600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr15:99947600-99949600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr15:99947600-99949600	Enhancers	Brain Angular Gyrus	brain
25	chr15:99947600-99949600	Enhancers	Brain Cingulate Gyrus	brain
26	chr15:99947600-99949600	Enhancers	HepG2	liver
27	chr15:99947800-99948600	Enhancers	Stomach Smooth Muscle	stomach
28	chr15:99947800-99949000	Enhancers	Fetal Brain Male	brain
29	chr15:99947800-99949200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr15:99947800-99949600	Enhancers	Primary T cells fromperipheralblood	blood
31	chr15:99947800-99949600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:99947800-99949600	Enhancers	Brain Germinal Matrix	brain
33	chr15:99947800-99949600	Enhancers	Fetal Heart	heart
34	chr15:99947800-99949600	Enhancers	Fetal Thymus	thymus
35	chr15:99947800-99950000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:99948000-99948400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:99948000-99948400	Enhancers	Primary B cells from peripheral blood	blood
38	chr15:99948000-99948600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr15:99948000-99948800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr15:99948000-99949400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:99948000-99949600	Enhancers	Brain Anterior Caudate	brain
42	chr15:99948000-99949600	Enhancers	Fetal Lung	lung
43	chr15:99948000-99949800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:99948000-99950000	Enhancers	Placenta	Placenta
45	chr15:99948000-99950000	Enhancers	Right Ventricle	heart
46	chr15:99948000-99950200	Enhancers	Fetal Muscle Leg	muscle
47	chr15:99948000-99950200	Enhancers	Left Ventricle	heart
48	chr15:99948000-99951000	Enhancers	Fetal Stomach	stomach
49	chr15:99948200-99948600	Enhancers	Adipose Nuclei	Adipose
50	chr15:99948200-99948800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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