Variant report

Variant	rs11858945
Chromosome Location	chr15:33491163-33491164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16953745	1.00[ASN][1000 genomes]
rs7163938	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033333	1.00[ASN][1000 genomes]
rs907951	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33487600-33492800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:33487600-33493200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:33487600-33493400	Weak transcription	Psoas Muscle	Psoas
4	chr15:33487800-33492000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:33487800-33492000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:33487800-33492000	Weak transcription	A549	lung
7	chr15:33487800-33492200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:33487800-33492600	Weak transcription	Fetal Intestine Small	intestine
9	chr15:33487800-33492800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:33487800-33493600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:33487800-33493800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:33487800-33493800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:33487800-33494000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:33487800-33494000	Weak transcription	Pancreas	Pancrea
15	chr15:33487800-33502400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:33488000-33491200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:33488000-33492000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:33488000-33492200	Weak transcription	Fetal Kidney	kidney
19	chr15:33488000-33493000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr15:33488000-33493200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:33488000-33493400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:33488000-33493400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:33488000-33493400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:33488000-33493400	Weak transcription	NHEK	skin
25	chr15:33488000-33493600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:33488600-33491200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:33488600-33492200	Weak transcription	Fetal Intestine Large	intestine
28	chr15:33488800-33494000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:33490600-33491400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr15:33490800-33492000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:33491000-33493200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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