Variant report

Variant	rs11858955
Chromosome Location	chr15:44246293-44246294
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44240850..44243740-chr15:44243781..44246529,3	K562	blood:
2	chr15:44237269..44240458-chr15:44244301..44246946,3	K562	blood:
3	chr15:44244363..44246293-chr15:44248151..44250160,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11858342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41277700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44227200-44251000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:44242000-44250400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:44243600-44248200	Enhancers	Brain Substantia Nigra	brain
4	chr15:44243800-44247600	Enhancers	Brain Anterior Caudate	brain
5	chr15:44243800-44247600	Enhancers	Brain Cingulate Gyrus	brain
6	chr15:44243800-44247600	Enhancers	Brain Hippocampus Middle	brain
7	chr15:44243800-44247800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:44244000-44246800	Enhancers	Brain Angular Gyrus	brain
9	chr15:44244600-44246600	Weak transcription	Fetal Heart	heart
10	chr15:44245200-44250600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:44245400-44246400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:44245400-44250400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:44245800-44247400	Enhancers	NHDF-Ad	bronchial
14	chr15:44246000-44247400	Enhancers	HSMM	muscle
15	chr15:44246000-44247600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:44246200-44246400	Enhancers	Right Atrium	heart
17	chr15:44246200-44246600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:44246200-44246600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:44246200-44247000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:44246200-44247000	Enhancers	NH-A	brain
21	chr15:44246200-44247400	Enhancers	Osteobl	bone
22	chr15:44246200-44247600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:44246200-44247600	Enhancers	NHLF	lung
24	chr15:44246200-44247800	Enhancers	HSMMtube	muscle

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