Variant report

Variant	rs11859675
Chromosome Location	chr16:65230287-65230288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11864736	0.85[EUR][1000 genomes]
rs1862707	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34452380	0.85[EUR][1000 genomes]
rs62042989	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7195314	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv431509	chr16:65211408-65302840	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv431511	chr16:65213149-65252673	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv431512	chr16:65213406-65234631	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65229200-65231000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr16:65229600-65230800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:65229600-65231200	Enhancers	Fetal Stomach	stomach
4	chr16:65229800-65230600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr16:65229800-65230800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr16:65229800-65231000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:65229800-65231200	Enhancers	Fetal Muscle Leg	muscle
8	chr16:65229800-65231200	Enhancers	HSMMtube	muscle
9	chr16:65230000-65231000	Enhancers	Osteobl	bone
10	chr16:65230000-65231200	Enhancers	Colon Smooth Muscle	Colon
11	chr16:65230000-65231200	Enhancers	Fetal Lung	lung
12	chr16:65230200-65231200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links