Variant report

Variant rs11860520
Chromosome Location chr16:65151742-65151743
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:65095800-65152000 Weak transcription Fetal Intestine Large intestine
2 chr16:65106800-65151800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr16:65144600-65153000 Weak transcription Placenta Placenta
4 chr16:65144600-65154000 Weak transcription Spleen Spleen
5 chr16:65147200-65151800 Weak transcription Placenta Amnion Placenta Amnion
6 chr16:65147400-65152800 Genic enhancers Fetal Stomach stomach
7 chr16:65148600-65152800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr16:65148600-65152800 Weak transcription NHEK skin
9 chr16:65149200-65151800 Weak transcription HMEC breast
10 chr16:65149600-65153200 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr16:65149800-65152000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr16:65150000-65151800 Enhancers Fetal Kidney kidney
13 chr16:65150000-65152000 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr16:65150000-65153600 Enhancers Rectal Smooth Muscle rectum
15 chr16:65150400-65151800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr16:65150400-65152600 Transcr. at gene 5' and 3' Osteobl bone
17 chr16:65150400-65153400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr16:65150600-65151800 Enhancers Muscle Satellite Cultured Cells --
19 chr16:65150600-65152000 Flanking Active TSS Brain Hippocampus Middle brain
20 chr16:65150600-65153200 Enhancers Colon Smooth Muscle Colon
21 chr16:65150600-65153800 Enhancers Cortex derived primary cultured neurospheres brain
22 chr16:65150800-65151800 Enhancers iPS-18 Cell Line embryonic stem cell
23 chr16:65150800-65152000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr16:65150800-65152000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
25 chr16:65150800-65152400 Transcr. at gene 5' and 3' Fetal Lung lung
26 chr16:65150800-65152600 Enhancers NHDF-Ad bronchial
27 chr16:65151000-65151800 Enhancers HUES64 Cell Line embryonic stem cell
28 chr16:65151000-65151800 Enhancers iPS-15b Cell Line embryonic stem cell
29 chr16:65151000-65152000 Enhancers HUES48 Cell Line embryonic stem cell
30 chr16:65151000-65152000 Flanking Active TSS Brain Germinal Matrix brain
31 chr16:65151000-65152000 Active TSS Brain Substantia Nigra brain
32 chr16:65151000-65153000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr16:65151000-65153000 Enhancers Fetal Adrenal Gland Adrenal Gland
34 chr16:65151200-65151800 Active TSS Brain Anterior Caudate brain
35 chr16:65151200-65152000 Flanking Active TSS NHLF lung
36 chr16:65151200-65154400 Active TSS Fetal Brain Female brain
37 chr16:65151400-65152000 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
38 chr16:65151400-65153200 Flanking Active TSS NH-A brain
39 chr16:65151400-65153800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr16:65151600-65151800 Enhancers ES-I3 Cell Line embryonic stem cell
41 chr16:65151600-65151800 Enhancers H9 Cell Line embryonic stem cell
42 chr16:65151600-65151800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
43 chr16:65151600-65151800 Enhancers HUES6 Cell Line embryonic stem cell
44 chr16:65151600-65151800 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
45 chr16:65151600-65151800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
46 chr16:65151600-65151800 Flanking Active TSS Brain Inferior Temporal Lobe brain
47 chr16:65151600-65151800 Flanking Active TSS Duodenum Smooth Muscle Duodenum
48 chr16:65151600-65151800 Active TSS Ovary ovary
49 chr16:65151600-65151800 Enhancers Psoas Muscle Psoas
50 chr16:65151600-65151800 Flanking Active TSS Stomach Smooth Muscle stomach

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